Advanced Light Microscopy and Spectroscopy Laboratory

Providing a unique collection of leading-edge optical microscopes, small-animal imaging devices, and fluorescent probes



Users of the ALMS Laboratory are requested to acknowledge their use of the Technology Centers at CNSI in their scholarly publications. All publications listed here included data acquired or generated in the ALMS Laboratory.

  • Baek KI, Chang SS, Chang CC, Roustaei M, Ding Y, Wang Y, Chen J, O’Donnell R,
    Chen H, Ashby JW, Xu X, Mack JJ, Cavallero S, Roper M, Hsiai TK. Vascular Injury in
    the Zebrafish Tail Modulates Blood Flow and Peak Wall Shear Stress to Restore
    Embryonic Circular Network. Front Cardiovasc Med. 2022 Mar 18;9:841101. doi:
    10.3389/fcvm.2022.841101. PMID: 35369301
  • Chen Y, Wang J, Hoar BB, Lu S, Liu C. Machine learning-based inverse design for
    electrochemically controlled microscopic gradients of O2 and H2O2. Proc Natl Acad Sci
    U S A. 2022 Aug 9;119(32):e2206321119. doi: 10.1073/pnas.2206321119. Epub 2022
    Aug 1. PMID: 35914135
  • Do TH, Ma F, Andrade PR, Teles R, de Andrade Silva BJ, Hu C, Espinoza A, Hsu JE,
    Cho CS, Kim M, Xi J, Xing X, Plazyo O, Tsoi LC, Cheng C, Kim J, Bryson BD, O’Neill
    AM, Colonna M, Gudjonsson JE, Klechevsky E, Lee JH, Gallo RL, Bloom BR,
    Pellegrini M, Modlin RL. TREM2 macrophages induced by human lipids drive
    inflammation in acne lesions. Sci Immunol. 2022 Jul 22;7(73):eabo2787. doi:
    10.1126/sciimmunol.abo2787. Epub 2022 Jul 22. PMID: 35867799
  • Li LK, Huang WC, Hsueh YY, Yamauchi K, Olivares N, Davila R, Fang J, Ding X,
    Zhao W, Soto J, Hasani M, Novitch B, Li S. Intramuscular delivery of neural crest stem
    cell spheroids enhances neuromuscular regeneration after denervation injury. Stem Cell
    Res Ther. 2022 May 16;13(1):205. doi: 10.1186/s13287-022-02877-1. PMID: 35578348
  • Liu Q, Wang X, Liao YP, Chang CH, Li J, Xia T, Nel AE. Use of a liver-targeting
    nanoparticle platform to intervene in peanut-induced anaphylaxis through delivery of an
    Ara h2 T-cell epitope. Nano Today. 2022 Feb 1;42:101370.
  • Lu V, Roy IJ, Torres A Jr, Joly JH, Ahsan FM, Graham NA, Teitell MA. Glutamine-
    dependent signaling controls pluripotent stem cell fate. Dev Cell. 2022 Mar
    14;57(5):610-623.e8. doi: 10.1016/j.devcel.2022.02.003. Epub 2022 Feb 24. PMID:
  • McKee CM, Chapski DJ, Wehling-Henricks M, Rosa-Garrido M, Kuro-O M, Vondriska
    TM, Tidball JG. The anti-aging protein Klotho affects early postnatal myogenesis by
    downregulating Jmjd3 and the canonical Wnt pathway. FASEB J. 2022
    Mar;36(3):e22192. doi: 10.1096/fj.202101298R. PMID: 35174906
  • Peng H, Rossetto D, Mansy SS, Jordan MC, Roos KP, Chen IA. Treatment of Wound
    Infections in a Mouse Model Using Zn2+-Releasing Phage Bound to Gold Nanorods.
    ACS Nano. 2022 Mar 22;16(3):4756-4774. doi: 10.1021/acsnano.2c00048. Epub 2022
    Mar 3. PMID: 35239330
  • Roustaei M, In Baek K, Wang Z, Cavallero S, Satta S, Lai A, O’Donnell R, Vedula V,
    Ding Y, Marsden AL, Hsiai TK. Computational simulations of the 4D micro-circulatory
    network in zebrafish tail amputation and regeneration. J R Soc Interface. 2022
    Feb;19(187):20210898. doi: 10.1098/rsif.2021.0898. Epub 2022 Feb 16. PMID:
  • Shibuya Y, Hokugo A, Okawa H, Kondo T, Khalil D, Wang L, Roca Y, Clements A,
    Sasaki H, Berry E, Nishimura I, Jarrahy R. Therapeutic downregulation of neuronal PAS
    domain 2 (Npas2) promotes surgical skin wound healing. Elife. 2022 Jan 18;11:e71074.
    doi: 10.7554/eLife.71074. PMID: 35040776
  • Shoji Y, Yokoe T, Kobayashi Y, Murakami T, Bostick PJ, Shiloh Y, Hoon DSB, Bustos
    MA. UBQLN4 promotes STING proteasomal degradation during cisplatin-induced DNA
    damage in triple-negative breast cancer. Clin Transl Med. 2022 Jul;12(7):e985. doi:
    10.1002/ctm2.985. PMID: 35839317
  • Song K, Minami JK, Huang A, Dehkordi SR, Lomeli SH, Luebeck J, Goodman MH,
    Moriceau G, Krijgsman O, Dharanipragada P, Ridgley T, Crosson WP, Salazar J, Pazol
    E, Karin G, Jayaraman R, Balanis NG, Alhani S, Sheu K, Ten Hoeve J, Palermo A,
    Motika SE, Senaratne TN, Paraiso KH, Hergenrother PJ, Rao PN, Multani AS, Peeper
    DS, Bafna V, Lo RS, Graeber TG. Plasticity of Extrachromosomal and Intrachromosomal
    BRAF Amplifications in Overcoming Targeted Therapy Dosage Challenges. Cancer
    Discov. 2022 Apr 1;12(4):1046-1069. doi: 10.1158/2159-8290.CD-20-0936. PMID:
  • Song Y, Soto J, Chen B, Hoffman T, Zhao W, Zhu N, Peng Q, Liu L, Ly C, Wong PK,
    Wang Y, Rowat AC, Kurdistani SK, Li S. Transient nuclear deformation primes
    epigenetic state and promotes cell reprogramming. Nat Mater. 2022 Oct;21(10):1191-
    1199. doi: 10.1038/s41563-022-01312-3. Epub 2022 Aug 4. PMID: 35927431.
  • Tan S, Huang T, Yavuz I, Wang R, Yoon TW, Xu M, Xing Q, Park K, Lee DK, Chen
    CH, Zheng R, Yoon T, Zhao Y, Wang HC, Meng D, Xue J, Song YJ, Pan X, Park NG,
    Lee JW, Yang Y. Stability-limiting heterointerfaces of perovskite photovoltaics. Nature.
    2022 May;605(7909):268-273. doi: 10.1038/s41586-022-04604-5. Epub 2022 Mar 15.
    PMID: 35292753.
  • Vu T, Vallmitjana A, Gu J, La K, Xu Q, Flores J, Zimak J, Shiu J, Hosohama L, Wu J,
    Douglas C, Waterman ML, Ganesan A, Hedde PN, Gratton E, Zhao W. Spatial
    transcriptomics using combinatorial fluorescence spectral and lifetime encoding, imaging
    and analysis. Nat Commun. 2022 Jan 10;13(1):169. doi: 10.1038/s41467-021-27798-0.
    PMID: 35013281
  • Xu X, Zhang Y, Ha P, Chen Y, Li C, Yen E, Bai Y, Chen R, Wu BM, Da Lio A, Ting K.
    A novel injectable fibromodulin‐releasing granular hydrogel for tendon healing and
    functional recovery. Bioengineering & Translational Medicine. 2022 Jul 14:e10355.
  • Agak GW, Mouton A, Teles RM, Weston T, Morselli M, Andrade PR, Pellegrini M, Modlin RL. Extracellular traps released by antimicrobial TH17 cells contribute to host defense. J Clin Invest. 2021 Jan 19;131(2):e141594.doi: 10.1172/JCI141594. PMID: 33211671.
  • Cao B, Zhao Z, Peng L, Shiu HY, Ding M, Song F, Guan X, Lee CK, Huang J, Zhu D, Fu X, Wong GCL, Liu C, Nealson K, Weiss PS, Duan X, Huang Y. Silver nanoparticles boost charge-extraction efficiency in Shewanella microbial fuel cells. Science. 2021 Sep 17;373(6561):1336-1340. doi: 10.1126/science.abf3427. Epub 2021 Sep 16. PMID: 34529487.
  • Christov F, Nelson EG, Xu LJ, Lopez IA, Ishiyama A, Gluth MB. Histology of the Cochlear Outer Sulcus Cells in Normal Human Ears, Presbycusis, and Menière’s Disease. Otol Neurotol. 2020 Apr;41(4):e507-e515. doi: 10.1097/MAO.0000000000002535. PMID: 32176147.
  • Cipollari S, Jamshidi N, Du L, Sung K, Huang D, Margolis DJ, Huang J, Reiter RE, Kuo MD. Tissue clearing techniques for three-dimensional optical imaging of intact human prostate and correlations with multi-parametric MRI. Prostate. 2021 Jun;81(9):521-529. doi: 10.1002/pros.24129. Epub 2021 Apr 20. PMID: 33876838.
  • Cosco ED, Lim I, Sletten EM. Photophysical Properties of Indocyanine Green in the Shortwave Infrared Region. ChemPhotoChem. 2021 Aug;5(8):727-734. doi: 10.1002/cptc.202100045. Epub 2021 Apr 28. PMID: 34504949
  • Ehsanipour A, Sathialingam M, Rad LM, de Rutte J, Bierman RD, Liang J, Xiao W, Di Carlo D, Seidlits SK. Injectable, macroporous scaffolds for delivery of therapeutic genes to the injured spinal cord. APL Bioeng. 2021 Mar 9;5(1):016104. doi: 10.1063/5.0035291. PMID: 33728392
  • Fang J, Sia J, Soto J, Wang P, Li LK, Hsueh YY, Sun R, Faull KF, Tidball JG, Li S. Skeletal muscle regeneration via the chemical induction and expansion of myogenic stem cells in situ or in vitro. Nat Biomed Eng. 2021 Mar 18. doi: 10.1038/s41551-021-00696-y. Epub ahead of print. PMID: 33737730.
  • Feng A-C. Highly Selective Roles of Key Transcription Factors in Genome-Wide Toll-Like Receptor-Induced Nucleosome Remodeling in Activated Macrophages.Doctoral dissertation, UCLA. 2021.
  • Flores I, Welc SS, Wehling-Henricks M, Tidball JG. Myeloid cell-mediated targeting of LIF to dystrophic muscle causes transient increases in muscle fiber lesions by disrupting the recruitment and dispersion of macrophages in muscle. Hum Mol Genet. 2021 Dec 27;31(2):189-206. doi: 10.1093/hmg/ddab230. PMID: 34392367.
  • Griffin DR, Archang MM, Kuan CH, Weaver WM, Weinstein JS, Feng AC, Ruccia A, Sideris E, Ragkousis V, Koh J, Plikus MV, Di Carlo D, Segura T, Scumpia PO. Activating an adaptive immune response from a hydrogel scaffold imparts regenerative wound healing. Nat Mater. 2021 Apr;20(4):560-569. doi: 10.1038/s41563-020-00844-w. Epub 2020 Nov 9. PMID: 33168979
  • Guo L, Bloom J, Serrate DD, David EB, Schubert OT, Kazuma K, Ho K,Wei Y, Leighton D, Boocock J, Vergara TL, Riutort M, Alvarado AS, Kruglyak L. Island-specific evolution of a sex-primed autosome in the planarian Schmidtea mediterranea. doi:
  • Hirota M, Sugita Y, Ishijima M, Ikeda T, Saruta J, Maeda H, Ogawa T.UV photocatalytic activity of titanium dioxide (TiO2) surface contaminated with bacterial biofilm: Implications for photo-restoration of osteoconductivity.Materials Today Advances 2021.
  • 12: 100182, ISSN 2590-0498.
  • Ikeda T, Ueno T, Saruta J, Hirota M, Park W, Ogawa T. Ultraviolet Treatment of Titanium to Enhance Adhesion and Retention of Oral Mucosa Connective Tissue and Fibroblasts. Int J Mol Sci. 2021 Nov 17;22(22):12396. doi: 10.3390/ijms222212396. PMID: 34830275
  • Lamkin DM , Bradshaw KP, Chang J, Epstein M, GombergJ, Prajapati KP, Soliman VH, Sylviana T, Wong Y, Morizono K, Sloan EK, Cole SW.  Physical activity modulates mononuclearphagocytes in mammary tissue and inhibits tumor growth in mice. PeerJ. 9:e10725
  • Lee S, de Rutte J, Dimatteo R, Koo D, Di Carlo D. Scalable Fabrication and Use of 3D Structured Microparticles Spatially Functionalized with Biomolecules. ACS Nano. 2021 Nov 30. doi: 10.1021/acsnano.1c05857. Epub ahead of print. PMID: 34846855.
  • Li J, Guiney LM, Downing JR, Wang X, Chang CH, Jiang J, Liu Q, Liu X, Mei KC, Liao YP, Ma T, Meng H, Hersam MC, Nel AE, Xia T. Dissolution of 2D Molybdenum Disulfide Generates Differential Toxicity among Liver Cell Types Compared to Non-Toxic 2D Boron Nitride Effects. Small. 2021 Jun;17(25):e2101084. doi: 10.1002/smll.202101084. Epub 2021 May 24. PMID: 34032006
  • Li J, Wang X, Chang CH, Jiang J, Liu Q, Liu X, Liao YP, Ma T, Meng H, Xia T. Nanocellulose Length Determines the Differential Cytotoxic Effects and Inflammatory Responses in Macrophages and Hepatocytes. Small. 2021 Sep;17(38):e2102545. doi: 10.1002/smll.202102545. Epub 2021 Aug 6. PMID: 34363305
  • Li J, Wang X, Kuo-Ching M, Chong HC, Jiang J, Liu X, Liu Q, Guiney LM, Hersam MC, LaoY-P, Meng, H, Xia T. Lateral size of graphene oxide determines differential cellular uptake and cell death pathways in Kupffer cells, LSECs, and hepatocytes. NanotodayVolume 37, April 2021, 101061.
  • Liu Q, Wang X, Liu X, Liao YP, Chang CH, Mei KC, Jiang J, Tseng S, Gochman G, Huang M, Thatcher Z, Li J, Allen SD, Lucido L, Xia T, Nel AE. Antigen- and Epitope-Delivering Nanoparticles Targeting Liver Induce Comparable Immunotolerance in Allergic Airway Disease and Anaphylaxis as Nanoparticle-Delivering Pharmaceuticals. ACS Nano. 2021 Jan 26;15(1):1608-1626. doi: 10.1021/acsnano.0c09206. Epub 2020 Dec 22. PMID: 33351586
  • Liu X, Jiang J, Chang CH, Liao YP, Lodico JJ, Tang I, Zheng E, Qiu W, Lin M, Wang X, Ji Y, Mei KC, Nel AE, Meng H. Development of Facile and Versatile Platinum Drug Delivering Silicasome Nanocarriers for Efficient Pancreatic Cancer Chemo-Immunotherapy. Small. 2021 Apr;17(14):e2005993. doi: 10.1002/smll.202005993. Epub 2021 Mar 7. PMID: 33682329; PMCID: PMC8035264.
  • Liu X, Jiang J, Liao YP, Tang I, Zheng E, Qiu W, Lin M, Wang X, Ji Y, Mei KC, Liu Q, Chang CH, Wainberg ZA, Nel AE, Meng H. Combination Chemo-Immunotherapy for Pancreatic Cancer Using the Immunogenic Effects of an Irinotecan Silicasome Nanocarrier Plus Anti-PD-1. Adv Sci (Weinh). 2021 Jan 27;8(6):2002147. doi: 10.1002/advs.202002147. PMID: 33747719
  • Lu S, Rodrigues RM, Huang S, Estabrook DA, Chapman JO, Guan X, Sletten EM, Liu C. Perfluorocarbon Nanoemulsions Create a Beneficial O2 Microenvironment in N2-fixing Biological | Inorganic Hybrid. Chem Catal. 2021 Aug 19;1(3):704-720. doi: 10.1016/j.checat.2021.06.002. Epub 2021 Jun 28. PMID: 34693393
  • Prakash R, Thareja NS, Carmichael TS, Barnhill RL, Lugassy C, Bentolila LA. Visualizing Pericyte Mimicry of Angiotropic Melanoma by Direct Labeling of the Angioarchitecture. Methods Mol Biol. 2021;2235:1-12. doi: 10.1007/978-1-0716-1056-5_1. PMID: 33576966
  • Ramos RI, Bustos MA, Wu J, Jones P, Chang SC, Kiyohara E, Tran K, Zhang X, Stern SL, Izraely S, Sagi-Assif O, Witz IP, Davies MA, Mills GB, Kelly DF, Irie RF, Hoon DSB. Upregulation of cell surface GD3 ganglioside phenotype is associated with human melanoma brain metastasis. Mol Oncol. 2020 Aug;14(8):1760-1778. doi: 10.1002/1878-0261.12702. Epub 2020 Jun 5. PMID: 32358995
  • Roustaei M, Baek KI, Wang Z, Cavallero S, Satta S, Lai A, O’Donnell R, Vedula V, Ding Y, Marsden AL, Hsiai T. Computational Simulations of the 4-D Micro-Circulatory Network in Zebrafish Tail Amputation and Regeneration. – bioRxiv, 2021
  • Sadier A, Anthwal N, AL, Dessalles R, Lake M, Bentolila L, Haase R, Nieves N, Santana S, Sears K.  Growth rate as a modulator of tooth patterning during adaptive radiations.  doi:
  • Sercel AJ, Patananan AN, Man T, Wu TH, Yu AK, Guyot GW, Rabizadeh S, Niazi KR, Chiou PY, Teitell MA. Stable transplantation of human mitochondrial DNA by high-throughput, pressurized isolated mitochondrial delivery. Elife. 2021 Jan 13;10:e63102. doi: 10.7554/eLife.63102. PMID: 33438576;
  • Song K, Minami JK, Huang A, Dehkordi SR, Lomeli SH, Luebeck J, Goodman MH, Moriceau G, Krijgsman O, Dharanipragada P, Ridgley T, Crosson WP, Salazar J, Pazol E, Karin G, Jayaraman R, Balanis NG, Alhani S, Sheu K, Ten Hoeve J, Palermo A, Motika SE, Senaratne TN, Paraiso KH, Hergenrother PJ, Rao PN, Multani AS, Peeper DS, Bafna V, Lo RS, Graeber TG. Plasticity of extrachromosomal and intrachromosomal BRAF amplifications in overcoming targeted therapy dosage challenges. Cancer Discov. 2021 Dec 20:candisc.0936.2020. doi: 10.1158/2159-8290.CD-20-0936. Epub ahead of print. PMID: 34930786.
  • Song Y, Soto J, Chen B, Zhao W, Hoffman T, Zhu N, Peng Q, Ly C, Wong PK, WangY, Rowat AC, Kurdistani SK, Li S. Transient nuclear deformation primesepigenetic state and promotes cell reprogramming  bioRxiv, 2021.
  • Stephenson R, Mangasarian A, Ishiyama G, Hosokawa K, Hosokawa S, Ishiyama A, Lopez IA. Immunohistochemical location of Na+, K+-ATPase α1 subunit in the human inner ear. Hear Res. 2021 Feb;400:108113. doi: 10.1016/j.heares.2020.108113. Epub 2020 Nov 13. PMID: 33221698
  • Termini CM, Pang A, Batton DM, Chute JP. Proteoglycans regulate protein tyrosine phosphatase receptor σ organization on hematopoietic stem/progenitor cells. Exp Hematol. 2021 Apr;96:44-51. doi: 10.1016/j.exphem.2021.01.005. Epub 2021 Jan 27. PMID: 33515635.
  • Termini CM, Pang A, Fang T, Roos M, Chang VY, Zhang Y, Setiawan NJ, Signaevskaia L, Li M, Kim MM, Tabibi O, Lin PK, Sasine JP, Chatterjee A, Murali R, Himburg HA, Chute JP. Neuropilin 1 regulates bone marrow vascular regeneration and hematopoietic reconstitution. Nat Commun. 2021 Nov 30;12(1):6990. doi: 10.1038/s41467-021-27263-y. PMID: 34848712
  • Wang Z, Zhu L, Zhang H, Li G, Yi C, Li Y, Yang Y, Ding Y, Zhen M, Gao S, Hsiai TK, Fei P. Real-time volumetric reconstruction of biological dynamics with light-field microscopy and deep learning. Nat Methods. 2021 May;18(5):551-556. doi: 10.1038/s41592-021-01058-x. Epub 2021 Feb 11. PMID: 33574612.
  • Xiao X, Kim Y, Romartinez-Alonso B, Sirvydis K, Ory DS, Schwabe JWR, Jung ME, Tontonoz P. Selective Aster inhibitors distinguish vesicular and nonvesicular sterol transport mechanisms. Proc Natl Acad Sci U S A. 2021 Jan 12;118(2):e2024149118. doi: 10.1073/pnas.2024149118. PMID: 33376205.
  • Young BK, Ramakrishnan C, Ganjawala T, Wang P, Deisseroth K, Tian N. An uncommon neuronal class conveys visual signals from rods and cones to retinal ganglion cells. Proc Natl Acad Sci U S A. 2021 Nov 2;118(44):e2104884118. doi: 10.1073/pnas.2104884118. PMID: 34702737.
  • Yu N, Kiani S, Xu M, Kim CC. Brightness of Microtrench Superhydrophobic Surfaces and Visual Detection of Intermediate Wetting States. Langmuir. 2021 Jan 26;37(3):1206-1214. doi: 10.1021/acs.langmuir.0c03172. Epub 2021 Jan 11. PMID: 33428410.
  • Zhang W, Liu W, Jia L, Chen D, Chang I, Lake M, Bentolila LA, Wang CY. Targeting KDM4A epigenetically activates tumor-cell-intrinsic immunity by inducing DNA replication stress. Mol Cell. 2021 Mar 11:S1097-2765(21)00168-4. doi: 10.1016/j.molcel.2021.02.038. Epub ahead of print. PMID: 33743195.
  • Zhang X, Bustos MA, Gross R, Ramos RI, Takeshima TL, Mills GB, Yu Q, Hoon DSB. Interleukin enhancer-binding factor 2 promotes cell proliferation and DNA damage response in metastatic melanoma. Clin Transl Med. 2021 Oct;11(10):e608. doi: 10.1002/ctm2.608. PMID: 34709752

Ferando I, Mody I. In vitro gamma oscillations following partial and complete ablation of ? subunit-containing GABAA receptors from parvalbumin interneurons. Neuropharmacology. 2015 Jan;88:91-8. doi: 10.1016/j.neuropharm.2014.09.010. Epub 2014 Sep 28. PMID:25261782

Ishijima M, Hirota M, Park W, Honda MJ, Tsukimura N, Isokawa K, Ishigami T, Ogawa T. Osteogenic cell sheets reinforced with photofunctionalized micro-thin titanium. J Biomater Appl. 2015 Jan 19. pii: 0885328214567693. [Epub ahead of print] PMID: 25604095

Liclican EL, Walser TC, Hazra S, Krysan K, Park SJ, Pagano PC, Gardner BK, Larsen JE, Minna JD, Dubinett SM. Loss of miR125a expression in a model of K-ras-dependent pulmonary premalignancy. Cancer Prev Res (Phila). 2014 Aug;7(8):845-55. doi: 10.1158/1940-6207.CAPR-14-0063. Epub 2014 Jun 9. PMID:  24913817

Simerman AA, Hill DL, Grogan TR, Elashoff D, Clarke NJ, Goldstein EH, Manrriquez AN, Chazenbalk GD, Dumesic DA. Intrafollicular cortisol levels inversely correlate with cumulus cell lipid content as a possible energy source during oocyte meiotic resumption in women undergoing ovarian stimulation for in vitro fertilization. Fertil Steril. 2015 Jan;103(1):249-57. doi: 10.1016/j.fertnstert.2014.09.034. Epub 2014 Oct 24. PMID: 25439840

Sun B, Wang X, Ji Z, Wang M, Liao YP, Chang CH, Li R, Zhang H, Nel AE, Xia T. NADPH Oxidase-Dependent NLRP3 Inflammasome Activation and its Important Role in Lung Fibrosis by Multiwalled Carbon Nanotubes.  Small. 2015 Jan 12. doi: 10.1002/smll.201402859. [Epub ahead of print] PMID: 25581126

Aijian AP, Garrell RL. Digital Microfluidics for Automated Hanging Drop Cell Spheroid Culture. J Lab Autom. 2014 Dec 15. pii: 2211068214562002. [Epub ahead of print] PMID: 25510471

Boado RJ, Lu JZ, Hui EK, Pardridge WM.Mol Pharm. Insulin receptor antibody sulfamidase fusion protein penetrates the primate blood-brain barrier and reduces glycosoaminoglycans in Sanfilippo type A cells. Mol Pharm. 2014 Aug 4;11(8):2928-34. doi: 1021/mp500258p. Epub 2014 Jun 26. PMID: 24949884

Comas-Garcia M, Garmann RF, Singaram SW, Ben-Shaul A, Knobler CM, Gelbart WM. Characterization of viral capsid protein self-assembly around short single-stranded RNA. J Phys Chem B  2014, 118, 7510?7519 . Epub  Jun 30. PMID: 24933579

Cui Y, Ostlund SB, James AS, Park CS, Ge W, Roberts KW, Mittal N, Murphy NP, Cepeda C, Kieffer BL, Levine MS, Jentsch JD, Walwyn WM, Sun YE, Evans  CJ, Maidment NT, Yang XW.  Targeted expression of ?-opioid receptors in a subset of striatal direct-pathway neurons restores opiate reward. Nat Neurosci.2014 Feb;17(2):254-61. doi: 10.1038/nn.3622. Epub 2014 Jan 12. PMID:


Drew BG, Ribas V, Le JA, Henstridge DC, Phun J, Zhou Z, Soleymani T, Daraei P, Sitz D, Vergnes L, Wanagat J, Reue K, Febbraio MA, Hevener AL. HSP72 is a mitochondrial stress sensor critical for Parkin action, oxidative metabolism, and insulin sensitivity in skeletal muscle. Diabetes. 2014 May;63(5):1488-505. doi: 10.2337/db13-0665. Epub 2013 Dec 30. PMID:24379352

Duran I, Nevarez L, Sarukhanov A, Wu S, Lee K, Krejci P, Weis M, Eyre D, Krakow D, Cohn DH. HSP47 and FKBP65 cooperate in the synthesis of type I procollagen. Hum Mol Genet. 2014 Dec 15. pii: ddu608. [Epub ahead of print] PMID: 25510505

Ferrari R, Gou D, Jawdekar G, Johnson SA, Nava M, Su T, Yousef AF, Zemke NR, Pellegrini M, Kurdistani SK, Berk AJ. Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection. Cell Host Microbe. 2014 Nov 12;16(5):663-76. doi: 10.1016/j.chom.2014.10.004. Epub 2014 Nov 12. PMID: 25525796

Gebremariam T, Liu M, Luo G, Bruno V, Phan QT, Waring AJ, Edwards JE Jr, Filler SG, Yeaman MR, Ibrahim AS. CotH3 mediates fungal invasion of host cells during mucormycosis.J Clin Invest. 2014 Jan 2;124(1):237-50. doi: 10.1172/JCI71349. Epub 2013 Dec 20. PMID: 24355926

Jumabay M, Abdmaulen R, Ly A, Cubberly MR, Shahmirian LJ, Heydarkhan-Hagvall S, Dumesic DA, Yao Y, Boström KI.Pluripotent stem cells derived from mouse and human white mature adipocytes. Stem Cells Transl Med. 2014 Feb;3(2):161-71. doi: 10.5966/sctm.2013-0107. Epub 2014 Jan 6. PMID: 24396033

Khachatoorian R, Ganapathy E, Ahmadieh Y, Wheatley N, Sundberg C, Jung CL,Arumugaswami V, Raychaudhuri S, Dasgupta A, French SW. The NS5A-binding heat shock proteins HSC70 and HSP70 play distinct roles in the hepatitis C viral life cycle.Virology. 2014 Apr;454-455:118-27. doi: 10.1016/j.virol.2014.02.016. Epub 2014 Feb 28. PMID:24725938

Kisalu NK, Langousis G, Bentolila LA, Ralston KS, Hill KL. Mouse infection and pathogenesis by Trypanosoma brucei motility mutants. Cell Microbiol. 2014 Jun;16(6):912-24. doi: 10.1111/cmi.12244. Epub 2014 Jan 8. PMID: 24286532

Kittur H, Weaver W, Di Carlo D. Well-plate mechanical confinement platform for studies of mechanical mutagenesis. Biomed Microdevices. 2014 Jun;16(3):439-47. doi: 10.1007/s10544-014-9846-4. PMID: 24619125

Lei NY, Jabaji Z, Wang J, Joshi VS, Brinkley GJ, Khalil H, Wang F, Jaroszewicz A, Pellegrini M, Li L, Lewis M, Stelzner M, Dunn JC, Martín MG.  Intestinal subepithelial myofibroblasts support the growth of intestinal epithelial stem cells.PLoS One. 2014 Jan 6;9(1):e84651. doi:10.1371/journal.pone.0084651.PMID:24400106

Liba A, Wanagat J.  Single Cell Multiplex Protein Measurements through Rare Earth Element Immunolabeling, Laser Capture Microdissection and Inductively Coupled Mass Spectrometry. J Cytol Histol 2014 5:290. doi: 10.4172/2157-7099.1000290

Li R, Ji Z, Qin H, Kang X, Sun B, Wang M, Chang CH, Wang X, Zhang H, Zou H, Nel AE, Xia T. Interference in autophagosome fusion by rare earth nanoparticles disrupts autophagic flux and regulation of an interleukin-1? producing inflammasome. ACS Nano. 2014 Oct 28;8(10):10280-92. doi: 10.1021/nn505002w. Epub 2014 Oct 1.PMID: 25251502

Li R, Ji Z, Chang CH, Dunphy DR, Cai X, Meng H, Zhang H, Sun B, Wang X, Dong J, Lin S, Wang M, Liao YP, Brinker CJ, Nel A, Xia T. Surface interactions with compartmentalized cellular phosphates explain rare earth oxide nanoparticle hazard and provide opportunities for safer design. ACS Nano. 2014 Feb 25;8(2):1771-83. doi: 10.1021/nn406166n. Epub 2014 Jan 26.

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Schenk M, Krutzik SR, Sieling PA, Lee DJ, Teles RM, Ochoa MT, Komisopoulou E, Sarno EN, Rea TH, Graeber TG, Kim S, Cheng G, Modlin RL.NOD2 triggers an interleukin-32-dependent human dendritic cell program in leprosy. Nat Med. 2012 Mar 25;18(4):555-63. doi: 10.1038/nm.2650. PMID: 22447076

Tseng P, Judy JW, Di Carlo D. Magnetic nanoparticle-mediated massively parallel mechanical modulation of single-cell behavior. Nat Methods. 2012 Nov;9(11):1113-9. doi: 10.1038/nmeth.2210. Epub 2012 Oct 14. PMID: 23064517

Tsirulnikov K, Abuladze N, Bragin A, Faull K, Cascio D, Damoiseaux R, Schibler MJ, Pushkin A. Inhibition of aminoacylase 3 protects rat brain cortex neuronal cells from the toxicity of 4-hydroxy-2-nonenal mercapturate and 4-hydroxy-2-nonenal. Toxicol Appl Pharmacol. 2012 Sep 15;263(3):303-14. doi: 10.1016/j.taap.2012.07.002. Epub 2012 Jul 20. PMID: 22819785

Wang X, Xia T, Duch MC, Ji Z, Zhang H, Li R, Sun B, Lin S, Meng H, Liao YP, Wang M, Song TB, Yang Y, Hersam MC, Nel AE. Pluronic F108 coating decreases the lung fibrosis potential of multiwall carbon nanotubes by reducing lysosomal injury. Nano Lett. 2012 Jun 13;12(6):3050-61. doi: 10.1021/nl300895y. Epub 2012 May 4. PMID: 22546002

Xu J, Ruchala P, Ebenstain Y, Li JJ, Weiss S. Stable, compact, bright biofunctional quantum dots with improved peptide coating. J Phys Chem B. 2012 Sep 13;116(36):11370-8. doi: 10.1021/jp306453y. Epub 2012 Aug 30. PMID: 22900542

Xu J, Teslaa T, Wu TH, Chiou PY, Teitell MA, Weiss S. Nanoblade delivery and incorporation of quantum dot conjugates into tubulin networks in live cells. Nano Lett. 2012 Nov 14;12(11):5669-72. doi: 10.1021/nl302821g. Epub 2012 Nov 5. PMID: 23094784

Xu, L.; Feng, Z.; Sinha, D.; Ebenstein, Y.; Gauron, C.; Lin, S.; Weiss, S.; Jullien, L.; Vriz, S.; Bensimon, D.; “Spatio-temporal manipulation of retinoic acid activity in zebrafish hindbrain development via photo-isomerization”, Development, 2012, 139, 3355-62. PMID: 22874920.

Ye L, Fan Z, Yu B, Chang J, Al Hezaimi K, Zhou X, Park NH, Wang CY. Histone demethylases KDM4B and KDM6B promotes osteogenic differentiation of human MSCs. Cell Stem Cell. 2012 Jul 6;11(1):50-61. doi: 10.1016/j.stem.2012.04.009. PMID: 22770241

Zhang H, Dunphy DR, Jiang X, Meng H, Sun B, Tarn D, Xue M, Wang X, Lin S, Ji Z, Li R, Garcia FL, Yang J, Kirk ML, Xia T, Zink JI, Nel A, Brinker CJ. Processing pathway dependence of amorphous silica nanoparticle toxicity: colloidal vs pyrolytic. J Am Chem Soc. 2012 Sep 26;134(38):15790-804. Epub 2012 Sep 17. PMID: 22924492

Zhang H, Ji Z, Xia T, Meng H, Low-Kam C, Liu R, Pokhrel S, Lin S, Wang X, Liao YP, Wang M, Li L, Rallo R, Damoiseaux R, Telesca D, Mädler L, Cohen Y, Zink JI, Nel AE.  Use of metal oxide nanoparticle band gap to develop a predictive paradigm for oxidative stress and acute pulmonary inflammation. ACS Nano. 2012 May 22;6(5):4349-68. doi: 10.1021/nn3010087. Epub 2012 Apr 24. PMID: 22502734

Zheng Z, Jian J, Zhang X, Zara JN, Yin W, Chiang M, Liu Y, Wang J, Pang S, Ting K, Soo C. Reprogramming of human fibroblasts into multipotent cells with a single ECM proteoglycan, fibromodulin. Biomaterials. 2012 Aug;33(24):5821-31. doi: 10.1016/j.biomaterials.2012.04.049. Epub 2012 May 21. PMID:22622142

Ascenzi MG, Blanco C, Drayer I, Kim H, Wilson R, Retting KN, Lyons KM, Mohler G.Effect of localization, length and orientation of chondrocytic primary cilium on murine growth plate organization. J Theor Biol. 2011 Sep 21;285(1):147-55. Epub 2011 Jun 23 PMID:21723296

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Biag J, Huang Y, Gou L, Askarinam A, Hahn JD, Toga AW, Hintiryan H, Dong HW.Cyto- and chemoarchitecture of the hypothalamic paraventricular nucleus in the C57BL/6J male mouse: A study of immunostaining and multiple fluorescent tract tracing. J Comp Neurol. 2011 Jun 14. doi: 10.1002/cne.22698. [Epub ahead of print] PMID:21674499

Bimonte S, De Angelis A, Quagliata L, Giusti F, Tammaro R, Dallai R, Ascenzi MG, Diez-Roux G, Franco B. Ofd1 is required in limb bud patterning and endochondral bone development. Dev Biol. 2011 Jan 15;349(2):179-91. Epub 2010 Oct 14. PMID: 20920500

Coffinier C, Jung HJ, Nobumori C, Chang S, Tu Y, Barnes RH 2nd, Yoshinaga Y, de Jong PJ, Vergnes L, Reue K, Fong LG, Young SG. Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons Mol Biol Cell. 2011 Oct 5. [Epub ahead of print] PMID: 21976703

Du L, Kayali R, Bertoni C, Fike F, Hu H, Iversen PL, Gatti RA. Arginine-rich cell-penetrating peptide dramatically enhances AMO-mediated ATM aberrant splicing correction and enables delivery to brain and cerebellum. Hum Mol Genet. 2011 Aug 15;20(16):3151-60. Epub 2011 May 16. PMID:21576124

Du S, Sandoval F, Trinh P, Umeda E, Voskuhl R. Estrogen receptor-? ligand treatment modulates dendritic cells in the target organ during autoimmune demyelinating disease. Eur J Immunol. 2011 Jan;41(1):140-50. doi: 10.1002/eji.201040796. Epub 2010 Dec 9. PMID: 21182085

Ferris DP, Lu J, Gothard C, Yanes R, Thomas CR, Olsen JC, Stoddart JF, Tamanoi F, Zink JI. Synthesis of biomolecule-modified mesoporous silica nanoparticles for targeted hydrophobic drug delivery to cancer cells. Small. 2011 Jul 4;7(13):1816-26. doi: 10.1002/smll.201002300. Epub 2011 May 19. PMID: 21595023

Gangalum RK, Atanasov IC, Zhou ZH, Bhat SP. AlphaB-crystallin is found in detergent-resistant membrane microdomains and is secreted via exosomes from human retinal pigment epithelial cells.J Biol Chem. 2011 Feb 4;286(5):3261-9. Epub 2010 Nov 19. PMID: 21097504

GluckJM, Rahgozar P, Ingle NP, Rofail F, Petrosian A, Cline MG, Jordan MC, Roos KP, Maclellan WR, Shemin RJ, Heydarkhan-Hagvall S. Hybrid coaxial electrospun nanofibrous scaffolds with limited immunological response created for tissue engineering. J Biomed Mater Res B Appl Biomater. 2011 Oct;99(1):180-90. doi: 10.1002/jbm.b.31885. Epub 2011 Jul 5. PMID: 21732530

Gu Z, Zhao M, Sheng Y, Bentolila LA, Tang Y.   Detection of mercury ion by infrared fluorescent protein and its hydrogel-based paper assay.. Anal Chem. 2011 Mar 15;83(6):2324-9. Epub 2011 Feb 16.PMID: 21323346

Hori N, Iwasa F, Tsukimura N, Sugita Y, Ueno T, Kojima N, Ogawa T. Effects of UV photofunctionalization on the nanotopography enhanced initial bioactivity of titanium. Acta Biomater. 2011 Oct;7(10):3679-91. Epub 2011 Jul 1. PMID:21723964

Issa FA, Mazzochi C, Mock AF, Papazian DM. Spinocerebellar ataxia type 13 mutant potassium channel alters neuronal excitability and causes locomotor deficits in zebrafish. J Neurosci. 2011 May 4;31(18):6831-41. PMID: 21543613

Iwasa F, Tsukimura N, Sugita Y, Kanuru RK, Kubo K, Hasnain H, Att W, Ogawa T. TiO2 micro-nano-hybrid surface to alleviate biological aging of UV-photofunctionalized titanium. Int J Nanomedicine. 2011;6:1327-41. Epub 2011 Jun 28. PMID: 21760728

Iyer G, Pinaud F, Xu J, Ebenstein Y, Li J, Chang J, Dahan M, Weiss S. Aromatic aldehyde and hydrazine activated Peptide coated quantum dots for easy bioconjugation and live cell imaging. Bioconjug Chem. 2011 Jun 15;22(6):1006-11. Epub 2011 May 16. PMID: 21553893


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Kawamata N, Pennella MA, Woo JL, Berk AJ, Koeffler HP.Dominant-negative mechanism of leukemogenic PAX5 fusions. Oncogene. 2011 Jul 18. doi: 10.1038/onc.2011.291. [Epub ahead of print] PMID: 21765475

Khorasani H, Zheng Z, Nguyen C, Zara J, Zhang X, Wang J, Ting K, Soo C. A quantitative approach to scar analysis. Am J Pathol. 2011 Feb;178(2):621-8.PMID: 21281794

Kim S, Streets AM, Lin RR, Quake SR, Weiss S, Majumdar DS. High-throughput single-molecule optofluidic analysis, Nat Methods. 2011 Mar;8(3):242-5. Epub 2011 Feb 6.PMID: 21297618

Kitamura E, Gribanova YE, Farber DB. Regulation of retinoschisin secretion in Weri-Rb1 cells by the F-actin and microtubule cytoskeleton. PLoS One. 2011;6(6):e20707. Epub 2011 Jun 27. PMID: 21738583

Lei Y, Rahim M, Ng Q, Segura T. Hyaluronic acid and fibrin hydrogels with concentrated DNA/PEI polyplexes for local gene delivery. J Control Release. 2011 Aug 10;153(3):255-61. Epub 2011 Feb 2. PMID: 21295089

Lin S, Zhao Y, Xia T, Meng H, Ji Z, Liu R, George S, Xiong S, Wang X, Zhang H, Pokhrel S, Ma?dler L, Damoiseaux R, Lin S, Nel AE. High Content Screening in Zebrafish Speeds up Hazard Ranking of Transition Metal Oxide Nanoparticles.ACS Nano. 2011 Sep 27;5(9):7284-7295. Epub 2011 Aug 25. PMID:21851096


Lu JZ, Boado RJ, Hui EK, Zhou QH, Pardridge WM. Expression in CHO cells and pharmacokinetics and brain uptake in the Rhesus monkey of an IgG-iduronate-2-sulfatase fusion protein. Biotechnol Bioeng. 2011 Aug;108(8):1954-64. doi: 10.1002/bit.23118. Epub 2011 Mar 15. PMID: 21351076

Lu Y, Machado HB, Bao Q, Stout D, Herschman H, Chatziioannou AF. In vivo mouse bioluminescence tomography with radionuclide-based imaging validation. Mol Imaging Biol. 2011 Feb;13(1):53-8. PMID: 20464517

Ma QL, Yang F, Rosario ER, Ubeda OJ, Beech W, Gant DJ, Chen PP, Hudspeth B, Chen C, Zhao Y, Vinters HV, Frautschy SA, Cole GM. Beta-amyloid oligomers induce phosphorylation of tau and inactivation of insulin receptor substrate via c-Jun N-terminal kinase signaling: suppression by omega-3 fatty acids and curcumin. J Neurosci. 2009 Jul 15;29(28):9078-89. PMID:19605645

Maiti P, Piacentini R, Ripoli C, Grassi C, Bitan G. Surprising toxicity and assembly behaviour of amyloid ?-protein oxidized to sulfone. Biochem J. 2011 Jan 15;433(2):323-32. PMID: 21044048

Meng H, Yang S, Li Z, Xia T, Chen J, Ji Z, Zhang H, Wang X, Lin S, Huang C, Zhou ZH, Zink JI, Nel AE. Aspect ratio determines the quantity of mesoporous silica nanoparticle uptake by a small GTPase-dependent macropinocytosis mechanism. ACS Nano. 2011 Jun 28;5(6):4434-47. Epub 2011 May 12. PMID:21563770

Mengatto CM, Mussano F, Honda Y, Colwell CS, Nishimura I. Circadian rhythm and cartilage extracellular matrix genes in osseointegration: a genome-wide screening of implant failure by vitamin D deficiency. PLoS One. 2011 Jan 11;6(1):e15848. PMID: 21264318.

Minamikawa H, Yamada M, Deyama Y, Suzuki K, Kaga M, Yawaka Y, Ogawa T. Effect of N-acetylcysteine on rat dental pulp cells cultured on mineral trioxide aggregate. J Endod. 2011 May;37(5):637-41. Epub 2011 Mar 22. PMID: 21496663

Mishra A, Lai GH, Schmidt NW, Sun VZ, Rodriguez AR, Tong R, Tang L, Cheng J, Deming TJ, Kamei DT, Wong GC. Translocation of HIV TAT peptide and analogues induced by multiplexed membrane and cytoskeletal interactions. Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16883-8. Epub 2011 Oct 3. PMID:21969533

Nakatsu MN, Ding Z, Ng MY, Truong TT, Yu F, Deng SX. Wnt/?-catenin signaling regulates proliferation of human cornea epithelial stem/progenitor cells.Invest Ophthalmol Vis Sci. 2011 Jul 1;52(7):4734-41. Print 2011 Jun. PMID: 21357396

Preza GC, Ruchala P, Pinon R, Ramos E, Qiao B, Peralta MA, Sharma S, Waring A, Ganz T, Nemeth E.Minihepcidins are rationally designed small peptides that mimic hepcidin activity in mice and may be useful for the treatment of iron overload. J Clin Invest. 2011 Dec;121(12):4880-8. doi: 10.1172/JCI57693. PMID:22045566

Rodríguez JA, Luria-Pérez R, López-Valdés HE, Casero D, Daniels TR, Patel S, Avila D, Leuchter R, So S, Ortiz-Sánchez E, Bonavida B, Martínez-Maza O, Charles AC, Pellegrini M, Helguera G, Penichet ML. Lethal iron deprivation induced by non-neutralizing antibodies targeting transferrin receptor 1 in malignant B cells. Leuk Lymphoma. 2011 Nov;52(11):2169-78. Aug 28. [Epub ahead of print] PMID:1870996

Ruangsri S, Lin A, Mulpuri Y, Lee K, Spigelman I, Nishimura I. Relationship of axonal voltage-gated sodium channel 1.8 (NaV1.8) mRNA accumulation to sciatic nerve injury-induced painful neuropathy in rats. J Biol Chem. 2011 Nov 18;286(46):39836-47. Epub 2011 Sep 30. PMID:21965668

Schenke-Layland K, Nsair A, Van Handel B, Angelis E, Gluck JM, Votteler M, Goldhaber JI, Mikkola HK, Kahn M, Maclellan WR. Recapitulation of the embryonic cardiovascular progenitor cell niche. Biomaterials. 2011 Apr;32(11):2748-56. Epub 2011 Jan 22. PMID: 21257198

Sdek P, Zhao P, Wang Y, Huang CJ, Ko CY, Butler PC, Weiss JN, Maclellan WR. Rb and p130 control cell cycle gene silencing to maintain the postmitotic phenotype in cardiac myocytes. J Cell Biol. 2011 Aug 8;194(3):407-23. PMID: 21825075

Sokolow S, Luu SH, Headley AJ, Hanson AY, Kim T, Miller CA, Vinters HV, Gylys KH. High levels of synaptosomal Na(+)-Ca(2+) exchangers (NCX1, NCX2, NCX3) co-localized with amyloid-beta in human cerebral cortex affected by Alzheimer’s disease. Cell Calcium. 2011 Apr;49(4):208-16. Epub 2011 Mar 5. PMID: 21382638

Sokolow S, Luu SH, Nandy K, Miller CA, Vinters HV, Poon WW, Gylys KH. Preferential accumulation of amyloid-beta in presynaptic glutamatergic terminals (VGluT1 and VGluT2) in Alzheimer’s disease cortex. Neurobiol Dis. 2011 Sep 3. doi:10.1016/j.nbd.2011.08.027 [Epub ahead of print] PMID: 21914482

Spence RD, Hamby ME, Umeda E, Itoh N, Du S, Wisdom AJ, Cao Y, Bondar G, Lam J, Ao Y, Sandoval F, Suriany S, Sofroniew MV, Voskuhl RR. Neuroprotection mediated through estrogen receptor-alpha in astrocytes. Proc Natl Acad Sci U S A. 2011 May 24;108(21):8867-72. Epub 2011 May 9. PMID: 21555578

Sugita Y, Ishizaki K, Iwasa F, Ueno T, Minamikawa H, Yamada M, Suzuki T, Ogawa T. Effects of pico-to-nanometer-thin TiO(2) coating on the biological properties of microroughened titanium. Biomaterials. 2011 Nov;32(33):8374-84. Epub 2011 Aug 15.

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Sun VZ, Li Z, Deming TJ, Kamei DT. Intracellular fates of cell-penetrating block copolypeptide vesicles. Biomacromolecules. 2011 Jan 10;12(1):10-3. Epub 2010 Dec 3. PMID:21128599

Tao J, Wu H, Lin Q, Wei W, Lu XH, Cantle JP, Ao Y, Olsen RW, Yang XW, Mody I, Sofroniew MV, Sun YE. Deletion of astroglial Dicer causes non-cell-autonomous neuronal dysfunction and degeneration. J Neurosci. 2011 Jun 1;31(22):8306-19. PMID: 21632951

Tsukimura N, Yamada M, Iwasa F, Minamikawa H, Att W, Ueno T, Saruwatari L, Aita H, Chiou WA, Ogawa T. Synergistic effects of UV photofunctionalization and micro-nano hybrid topography on the biological properties of titanium. Biomaterials. 2011 Jul;32(19):4358-68. Epub 2011 Mar 21. PMID: 21421270

Ueno T, Yamada M, Sugita Y, Ogawa T. N-acetyl cysteine protects TMJ chondrocytes from oxidative stress. J Dent Res. 2011 Mar;90(3):353-9. Epub 2010 Nov 18. PMID: 21088145

Vincent JJ, Li Z, Lee SA, Liu X, Etter MO, Diaz-Perez SV, Taylor SK, Gkountela S, Lindgren AG, Clark AT. Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells. PLoS One. 2011; 6(12): e28960. doi: 10.1371/journal.pone.0028960. Epub 2011 Dec 15. PMID:22194959

Wen X, Yang JQ, Kim PJ, Singh RR. Homeostatic regulation of marginal zone B cells by invariant natural killer T cells. PLoS One. 2011;6(10):e26536. Epub 2011 Oct 26. PMID: 22046304

Wu TH, Teslaa T, Kalim S, French CT, Moghadam S, Wall R, Miller JF, Witte ON, Teitell MA, Chiou PY. Photothermal nanoblade for large cargo delivery into mammalian cells.. Anal Chem. 2011 Feb 15;83(4):1321-7. Epub 2011 Jan 19.PMID: 21247066

Xia T, Zhao Y, Sager T, George S, Pokhrel S, Li N, Schoenfeld D, Meng H, Lin S, Wang X, Wang M, Ji Z, Zink JI, Madler L, Castranova V, Nel AE. Decreased dissolution of ZnO by iron doping yields nanoparticles with reduced toxicity in the rodent lung and zebrafish embryos. ACS Nano. 2011 Feb 22;5(2):1223-35. Epub 2011 Jan 20. PMID: 21250651

Xue M, Zhong X, Shaposhnik Z, Qu Y, Tamanoi F, Duan X, Zink JI. pH-Operated mechanized porous silicon nanoparticles.J Am Chem Soc. 2011 Jun 15;133(23):8798-801. Epub 2011 May 24. PMID:21595466

Yamada M, Ishihara K, Ogawa T, Sakurai K. The inhibition of infection by wound pathogens on scaffold in tissue-forming process using N-acetyl cysteine. Biomaterials. 2011 Nov;32(33):8474-85. Epub 2011 Aug 12. PMID: 21840048

Zhang H, Xia T, Meng H, Xue M, George S, Ji Z, Wang X, Liu R, Wang M, France B, Rallo R, Damoiseaux R, Cohen Y, Bradley KA, Zink JI, Nel AE. Differential expression of syndecan-1 mediates cationic nanoparticle toxicity in undifferentiated versus differentiated normal human bronchial epithelial cells. ACS Nano. 2011 Apr 26;5(4):2756-69. Epub 2011 Mar 2. PMID: 21366263

Zhang H, Li Y, Lin Y, Huang Y, Duan X. Composition tuning the upconversion emission in NaYF4:Yb/Tm hexaplate nanocrystals. Nanoscale. 2011 Mar;3(3):963-6. Epub 2011 Jan 25. PMID: 21264435

Zhang H, Xu D, Huang Y, Duan X.  Highly spectral dependent enhancement of upconversion emission with sputtered gold island films. Chem Commun (Camb). 2011 Jan 21;47(3):979-81. Epub 2010 Nov 16. PMID: 21079884

Zhang J, Lei Y, Dhaliwal A, Ng QK, Du J, Yan M, Lu Y, Segura T. Protein-polymer nanoparticles for nonviral gene delivery. Biomacromolecules. 2011 Apr 11;12(4):1006-14. Epub 2011 Feb 16. PMID: 21323308

Zhang J, Tokatlian T, Zhong J, Ng QK, Patterson M, Lowry WE, Carmichael ST, Segura T. Physically Associated Synthetic Hydrogels with Long-Term Covalent Stabilization for Cell Culture and Stem Cell Transplantation.Adv Mater. 2011 Oct 14. doi: 10.1002/adma.201103349. [Epub ahead of print] PMID: 21997799

Zheng Z, Nguyen C, Zhang X, Khorasani H, Wang JZ, Zara JN, Chu F, Yin W, Pang S, Le A, Ting K, Soo C. Delayed wound closure in fibromodulin-deficient mice is associated with increased TGF-?3 signaling. J Invest Dermatol. 2011 Mar;131(3):769-78. Epub 2010 Dec 30. PMID: 21191417

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Ambartsumyan G, Gill RK, Perez SD, Conway D, Vincent J, Dalal Y, Clark AT. Centromere protein A dynamics in human pluripotent stem cell self-renewal, differentiation and DNA damage. Hum Mol Genet. 2010 Oct 15;19(20):3970-82. Epub 2010 Jul 22. PMID:20650959

Belanto JJ, Diaz-Perez SV, Magyar CE, Maxwell MM, Yilmaz Y, Topp K, Boso G, Jamieson CH, Cacalano NA, Jamieson CA. Dexamethasone induces dysferlin in myoblasts and enhances their myogenic differentiation. Neuromuscul Disord. 2010 Feb;20(2):111-21. Epub 2010 Jan 18. PMID: 20080405.

Bentolila, L. A. Direct in situ hybridization with oligonucleotide functionalized quantum dot probes. Methods Mol. Biol. 2010; 659:147-163.PMID: 20809309

Bishop JR, Passos-Bueno MR, Fong L, Stanford KI, Gonzales JC, Yeh E, Young SG, Bensadoun A, Witztum JL, Esko JD, Moulton KS. Deletion of the basement membrane heparan sulfate proteoglycan type XVIII collagen causes hypertriglyceridemia in mice and humans. PLoS One. 2010 Nov 10;5(11):e13919. PMID: 21085708

Cho JS, Pietras EM, Garcia NC, Ramos RI, Farzam DM, Monroe HR, Magorien JE, Blauvelt A, Kolls JK, Cheung AL, Cheng G, Modlin RL, Miller LS. 2010. IL-17 is essential for host defense against cutaneous Staphylococcus aureus infection in mice. 2010 J Clin Invest. May 3;120(5):1762-73. PMID: 20364087

Coffinier C, Jung HJ, Li Z, Nobumori C, Yun U, Farber EA, Davies BS, Weinstein MM, Yang SH, Lammerding J, Farahani JN, Bentolila LA, Fong LG, Young SG. Direct synthesis of lamin A, bypassing prelamin A processing, causes misshapen nuclei in fibroblasts but no detectable pathology in mice. J.Biol.Chem. 2010 Jul 2;285(27):20818-26. Epub 2010 May3.

Coffinier C, Chang SY, Nobumori C, Tu Y, Farber EA, Toth JI, Fong LG, Young SG. Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency.  2010 PNAS; Mar 16: 107(11):5076-81. Epub 2010 Feb 9. PMID: 20145110

Davies BS, Beigneux AP, Barnes RH , Tu Y, Gin P, Weinstein MM, Nobumori C, Nyren R, Goldberg I, Olivecrona G, Bensadoun A, Young SG, Fong LG. GPIHBP1 is responsible for the entry of lipoprotein lipase into capillaries. 2010 Cell Metab  Jul 4;12(1):42-52.

Du S, Sandoval F, Trinh P, Voskuhl RR. Additive effects of combination treatment with anti-inflammatory and neuroprotective agents in experimental autoimmune encephalomyelitis. J Neuroimmunol. 2010 Feb 26;219(1-2):64-74. Epub 2009 Dec 14. PMID: 20006910

Ebenstein, Y. and L A. Bentolila. Single-molecule detection: Focusing on the objective. 2010 Nat Nanotechnol. Feb;5(2):99-100. PMID: 20130586

Edfeldt K, Liu PT,Chunb R, Fabria M,  Schenka M,  Wheelwright M, Keegan C, Krutzik SR, Adams JS, Hewison M, Modlin RL. T-cell cytokines differentially control human monocyte antimicrobial responses by regulating vitamin D metabolism. Proc Natl Acad Sci U S A. 2010 December 28; 107(52): 22593¨C22598. PMCID: PMC3012480

Evseenko D, Zhu Y, Schenke-Layland K, Kuo J, Latour B, Ge S, Scholes J, Dravid G, Li X, MacLellan WR, Crooks GM. Mapping the first stages of mesoderm commitment during differentiation of human embryonic stem cells. Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13742-7. Epub 2010 Jul 19. PMID: 20643952

Farahani JN, Schibler MJ,  Bentolila LA  Stimulated Emission Depletion (STED) Microscopy: from Theory to Practice.  In:  Microscopy: Science, Technology, Applications and Education.  Badajoz, Spain.  A. Méndez-Vilas and J. Díaz (Eds.) ©FORMATEX 2010 pp. 1539-1547.


Garner OB, Aguilar HC, Fulcher JA, Levroney EL, Harrison R, Wright L, Robinson LR, Aspericueta V, Panico M, Haslam SM, Morris HR, Dell A, Lee B, Baum LG. Endothelial galectin-1 binds to specific glycans on nipah virus fusion protein and inhibits maturation, mobility, and function to block syncytia formation. PLoS Pathog. 2010 Jul 15;6(7):e1000993. PMID:20657665

Hori N, Iwasa F, Ueno T, Takeuchi K, Tsukimura N, Yamada M, Hattori M, Yamamoto A, Ogawa T. Selective cell affinity of biomimetic micro-nano-hybrid structured TiO2 overcomes the biological dilemma of osteoblasts. Dent Mater. 2010 Apr;26(4):275-87. Epub 2009 Dec 16. PMID: 20006380

Hori N, Ueno T, Suzuki T, Yamada M, Att W, Okada S, Ohno A, Aita H, Kimoto K, Ogawa T. Ultraviolet light treatment for the restoration of age-related degradation of titanium bioactivity. Int J Oral Maxillofac Implants. 2010 Jan-Feb;25(1):49-62. PMID: 20209187

Hutnick LK, Huang X, Loo TC, Ma Z, Fan G.Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by a DNA methylation-independent mechanism. J Biol Chem. 2010 Jul 2;285(27):21082-91. Epub 2010 Apr 19. PMID: 20404320

Iwasa F, Hori N, Ueno T, Minamikawa H, Yamada M, Ogawa T. Enhancement of osteoblast adhesion to UV-photofunctionalized titanium via an electrostatic mechanism. Biomaterials. 2010 Apr;31(10):2717-27. Epub 2009 Dec 24. PMID:20035996

Iyer G, Michalet X, Chang YP, Weiss S. Tracking single proteins in live cells using single-chain antibody fragment-fluorescent quantum dot affinity pair. Methods Enzymol. 2010;475:61-79. PMID:  20627153

Jumabay M, Zhang R, Yao Y, Goldhaber JI, Boström KI.  Spontaneously beating cardiomyocytes derived from white mature adipocytes. Cardiovasc Res. 2010 Jan 1;85(1):17-27. PMID:  19643806

Knight MJ, Joubert MK, Plotkowski ML, Kropat J, Gingery M, Sakane F, Merchant SS, Bowie JU. Zinc binding drives sheet formation by the SAM domain of diacylglycerol kinase ?. Biochemistry. 2010 Nov 9;49(44):9667-76. PMID:20857926

Krejci P, Prochazkova J, Smutny J, Chlebova K, Lin P, Aklian A, Bryja V, Kozubik A, Wilcox WR. FGFR3 signaling induces a reversible senescence phenotype in chondrocytes similar to oncogene-induced premature senescence. Bone. 2010 Jul;47(1):102-10. Epub 2010 Mar 31. PMID: 20362703

Lee BY, Jethwaney D, Schilling B, Clemens DL, Gibson BW, Horwitz MA. The Mycobacterium bovis bacille Calmette-Guerin phagosome proteome. Mol Cell Proteomics. 2010 Jan;9(1):32-53. Epub 2009 Oct 7. PMID: 19815536

Li S, Overman JJ, Katsman D, Kozlov SV, Donnelly CJ, Twiss JL, Giger RJ, Coppola G, Geschwind DH, Carmichael ST. An age-related sprouting transcriptome provides molecular control of axonal sprouting after stroke. Nat Neurosci. 2010 Dec;13(12):1496-504. Epub 2010 Nov 7. PMID: 21057507

Lin A, Hokugo A, Choi J, Nishimura I.Small cytoskeleton-associated molecule, fibroblast growth factor receptor 1 oncogene partner 2/wound inducible transcript-3.0 (FGFR1OP2/wit3.0), facilitates fibroblast-driven wound closure. Am J Pathol. 2010 Jan;176(1):108-21. Epub 2009 Dec 3. PMID:19959814

Lu J, Liong M, Li Z, Zink JI, Tamanoi F. Biocompatibility, biodistribution, and drug-delivery efficiency of mesoporous silica nanoparticles for cancer therapy in animals.Small. 2010 Aug 16;6(16):1794-805. PMID: 20623530

Matsumoto H, Kimura T, Haga K, Kasahara N, Anton P, McGowan I. Effective in vivo and ex vivo gene transfer to intestinal mucosa by VSV-G-pseudotyped lentiviral vectors. BMC Gastroenterol. 2010 May 11;10:44.  PMID: 20459837

Meng H, Liong M, Xia T, Li Z, Ji Z, Zink JI, Nel AE. Engineered design of mesoporous silica nanoparticles to deliver doxorubicin and P-glycoprotein siRNA to overcome drug resistance in a cancer cell line. ACS Nano. 2010 Aug 24;4(8):4539-50. PMID:20731437

Meng H, Xue M, Xia T, Zhao YL, Tamanoi F, Stoddart JF, Zink JI, Nel AE. Autonomous in vitro anticancer drug release from mesoporous silica nanoparticles by pH-sensitive nanovalves. J Am Chem Soc. 2010 Sep 15;132(36):12690-7. PMID:20718462

Minamikawa H, Yamada M, Iwasa F, Ueno T, Deyama Y, Suzuki K, Yawaka Y, Ogawa T. Amino acid derivative-mediated detoxification and functionalization of dual cure dental restorative material for dental pulp cell mineralization. Biomaterials. 2010 Oct;31(28):7213-25. PMID:  20621351

Miyauchi T, Yamada M, Yamamoto A, Iwasa F, Suzawa T, Kamijo R, Baba K, Ogawa T. The enhanced characteristics of osteoblast adhesion to photofunctionalized nanoscale TiO2 layers on biomaterials surfaces. Biomaterials. 2010 May;31(14):3827-39. Epub 2010 Feb 13. PMID: 20153521

Mussano F, Lee KJ, Zuk P, Tran L, Cacalano NA, Jewett A, Carossa S, Nishimura I. Differential effect of ionizing radiation exposure on multipotent and differentiation-restricted bone marrow mesenchymal stem cells. J Cell Biochem. 2010 Oct 1;111(2):322-32. PMID:20506196

Nakanishi N, Yuan D, Hartenstein V, Jacobs DK. Evolutionary origin of rhopalia: insights from cellular-level analyses of Otx and POU expression patterns in the developing rhopalial nervous system. Evol Dev. 2010 Jul-Aug;12(4):404-15. PMID: 20618436

Ochoa MT,  Teles R, Haas BE, Zaghi D, Li H,  Sarno EN, Rea TH, Modlin RL, Lee DJ. A role for interleukin-5 in promoting increased immunoglobin M at the site of disease in leprosy. Immunology, November 2010, Volume 131 Issue 3, p. 405-414; PMID: 20561085

Olafsen T, Young SG, Davies BS, Beigneux AP, Kenanova VE, Voss C, Young G, Wong KP, Barnes RH, Tu Y, Weinstein MM, Nobumori C, Huang SC, Goldberg IJ, Bensadoun A, Wu AM, Fong LG Unexpected expression pattern for GPIHBP1 in mouse tissues revealed by positron emission tomography scanning. J. Biol. Chem. 2010 Dec 10;285(50):39239-48. Epub 2010 Sep 30. PMID: 20889497

Pennella MA, Liu Y, Woo LJ,  Kim CA,  Berk AJ. Adenovirus E1B 55-kilodalton protein is a p53-SUMO1 E3ligase that represses p53 and stimulates its nuclear export through interactions with promyeloctic leukemia nuclear bodies. J Virol., December 2010, p. 12210-12225, Vol. 84, No. 23. PMID: 20861261. PMCID: PMC2976411

Pradhan AA, Walwyn W, Nozaki C, Filliol D, Erbs E, Matifas A, Evans C, Kieffer BL. Ligand-directed trafficking of the ?-opioid receptor in vivo: two paths toward analgesic tolerance. J Neurosci. 2010 Dec 8;30(49):16459-68. PMID:21147985

Sato N, Kubo K, Yamada M, Hori N, Suzuki T, Maeda H, Ogawa T. Osteoblast mechanoresponses on Ti with different surface topographies. J Dent Res. 2009 Sep;88(9):812-6. PMID: 19767577

Srikanth S, Jung H-J, Kim K-D , Souda P, Whitelegge J, Gwack Y.  A novel EF-hand protein, CRACR2A, is a cytosolic Ca2+ sensor that stabilizes CRAC channels in T cells. Nat Cell Biol. 2010 May;12(5):436-46. PMID: 20418871.

Suzuki T, Kubo K, Hori N, Yamada M, Kojima N, Sugita Y, Maeda H, Ogawa T. Nonvolatile buffer coating of titanium to prevent its biological aging and for drug delivery. Biomaterials. 2010 Jun;31(18):4818-28. Epub 2010 Mar 28. PMID: 20350765

Teles RMB, Krutzik SR,  Ochoa MT, Oliveira RB, Sarno EN,Modlin RL. Interleukin-4 regulates the expression of CD209 and subsequent uptake of Mycobacterium leprae by Schwann cells in human leprosy. Inf. and Imm. November 2010, p. 4634-4643, Vol. 78, No. 11; PMID: 20713631 PMCID: PMC2976321

Winchell CJ, Valencia JE, Jacobs DK. Confocal analysis of nervous system architecture in direct-developing juveniles of Neanthes arenaceodentata (Annelida, Nereididae).Front Zool. 2010 Jun 16;7:17. PMID: 20553614

Yamada M, Kubo K, Ueno T, Iwasa F, Att W, Hori N, Ogawa T. Alleviation of commercial collagen sponge- and membrane-induced apoptosis and dysfunction in cultured osteoblasts by an amino acid derivative. Int J Oral Maxillofac Implants. 2010 Sep-Oct;25(5):939-46. PMID: 20862407

Yamada M, Miyauchi T, Yamamoto A, Iwasa F, Takeuchi M, Anpo M, Sakurai K, Baba K, Ogawa T. Enhancement of adhesion strength and cellular stiffness of osteoblasts on mirror-polished titanium surface by UV-photofunctionalization. Acta Biomater. 2010 Dec;6(12):4578-88. Epub 2010 Jul 13. PMID: 20633705

Yan M, Du J, Gu Z, Liang M, Hu Y, Zhang W, Priceman S, Wu L, Zhou ZH, Liu Z, Segura T, Tang Y, Lu Y. A novel intracellular protein delivery platform based on single-protein nanocapsules. Nat Nanotechnol. 2010 Jan;5(1):48-53. Epub 2009 Nov 22. PMID:19935648

Yang J, Kickhoefer VA, Ng BC, Gopal A, Bentolila LA, John S, Tolbert SH, Rome LH. 2010. Vaults are dynamically unconstrained cytoplasmic nanoparticles capable of rapid half subunit exchange in vivo. ACS Nano.  4 (12):7229-7240. PMID: 21121616

Zhang H, Li Y, Ivanov IA, Qu Y, Huang Y, Duan X.  Plasmonic modulation of the upconversion fluorescence in NaYF(4):Yb/Tm hexaplate nanocrystals using gold nanoparticles or nanoshells. 2010 Angew Chem Int Ed Engl. Mar 16;49(16):2865-2868. PMID:  20235253

Zhong J, Chan A, Morad L, Kornblum HI, Fan G, Carmichael ST. Hydrogel matrix to support stem cell survival after brain transplantation in stroke.Neurorehabil Neural Repair. 2010 Sep;24(7):636-44. Epub 2010 Apr 27. PMID: 20424193

Adelson DW, Lao L, Zhang G, Kim W, Marvizón JCG. Substance P release and neurokinin 1 receptor activation in the rat spinal cord increases with the firing frequency of C-fibers. Neuroscience. 2009 Jun 30;161(2):538-53. Epub 2009 Mar 29. PMID: 19336248.

Aita H, Att W, Ueno T, Yamada M, Hori N, Iwasa F, Tsukimura N, Ogawa T. Ultraviolet light-mediated photofunctionalization of titanium to promote human mesenchymal stem cell migration, attachment, proliferation and differentiation. Acta Biomater. 2009 Oct;5(8):3247-57. Epub 2009 May 4 PMID: 19427421.

Aita H, Hori N, Takeuchi M, Suzuki T, Yamada M, Anpo M, Ogawa T. The effect of ultraviolet functionalization of titanium on integration with bone. Biomaterials. 2009 Feb;30(6):1015-25. PMID: 19042016.

Ascenzi, M.-G., Gill, J. and Lomovtsev, A.)  Erratum to ‘‘Orientation of collagen at the osteocyte lacunae in human secondary osteons’’ J. Biomech. 41/16 2008 3426–3435 J. Biomech. 2009  Erratum, 42, 661-662. (no PMID)

Ascenzi, M.-G., Gill, J. and Lomovtsev, A.)  Erratum to ‘‘Orientation of collagen at the osteocyte lacunae in human secondary osteons’’ J. Biomech. 41/16 2008 3426–3435 J Biomech. 2009 Erratum, Aug 7;42(11):1792.  (no PMID)

Att W, Hori N, Iwasa F, Yamada M, Ueno T, Ogawa T. The effect of UV-photofunctionalization on the time-related bioactivity of titanium and chromium-cobalt alloys. Biomaterials. 2009 Sep;30(26):4268-76. Epub 2009 May 26. PMID:19473697

Att W, Hori N, Takeuchi M, Ouyang J, Yang Y, Anpo M, Ogawa T. Time-dependent degradation of titanium osteoconductivity: an implication of biological aging of implant materials. Biomaterials. 2009 Oct;30(29):5352-63. PMID: 19595450

Att W, Kubo K, Yamada M, Maeda H, Ogawa T. Biomechanical properties of jaw periosteum-derived mineralized culture on different titanium topography. Int J Oral Maxillofac Implants. 2009 Sep-Oct;24(5):831-41. PMID: 19865623

Att W, Takeuchi M, Suzuki T, Kubo K, Anpo M, Ogawa T. Enhanced osteoblast function on ultraviolet light-treated zirconia. Biomaterials. 2009 Mar;30(7):1273-80. Epub 2008 Dec 18. PMID: 19095298

Att W, Yamada M, Ogawa T. Effect of titanium surface characteristics on the behavior and function of oral fibroblasts. Int J Oral Maxillofac Implants. 2009 May-Jun;24(3):419-31. PMID: 19587863

Balamotis MA, Pennella MA, Stevens JL, Wasylyk B, Belmont AS, Berk AJ. Complexity in transcription control at the activation domain-mediator interface. Sci Signal. 2009 May 5;2(69):ra20. PMID: 19417216;2/69/ra20

Barat B, Sirk SJ, McCabe KE, Li J, Lepin EJ, Remenyi R, Koh AL, Olafsen T, Gambhir SS, Weiss S, Wu AM.Cys-diabody quantum dot conjugates (immunoQdots) for cancer marker detection. Bioconjug Chem. 2009 Aug 19;20(8):1474-81. doi: 10.1021/bc800421f. Epub 2009 Jul 31.

Bentolila LA, Doose S, EbensteinY, Iyer G, Li JJ, Michalet X, Pinaud F, Tsay J, Weiss S. Peptide-functionalized quantum dots for live diagnostic imaging and therapeutic applications. In: Inorganic Nanoprobes for Biological Sensing and Imaging, Chap. 3 (Mattoussi, H. and Cheon, J., Eds), Artech House Publisher, Boston, Massachusetts. 2009 pp. 45-69.

Bentolila LA, Ebenstein Y, Weiss S. Quantum dots for in vivo small animal imaging. J Nucl Med. 2009 Apr;50(4):493-6. PMID: 19289434.

Brush JM, Kim K, Sayre JW, McBride WH, Iwamoto KS. Imaging of radiation effects on cellular 26S proteasome function in situ. Int J Radiat Biol. 2009 Jun;85(6):483-94.PMID:19401903

Chen W, Marvizón JC. Acute inflammation induces segmental, bilateral, supraspinally mediated opioid release in the rat spinal cord, as measured by mu-opioid receptor internalization. Neuroscience. 2009 Jun 16;161(1):157-72.  PMID: 19298846.

Cho JS, Hsu JV, Morrison SL. Localized expression of GITR-L in the tumor microenvironment promotes CD8(+) T cell dependent anti-tumor immunity. Cancer Immunol. Immunother. 2009 Jul;58(7):1057-69. PMID:19018533,

Deng B, Glanzman D, Tidball JG. Nitric oxide generated by muscle corrects defects in hippocampal neurogenesis and neural differentiation caused by muscular dystrophy.  J Physiol. 2009 Apr 15;587(Pt 8):1769-78. PMID: 19237426.

Ebenstein Y, Gassman N, Kim S, Antelman J, Kim Y, Ho S, Samuel R, Michalet X, Weiss S. Lighting up individual DNA binding proteins with quantum dots. Nano Lett. 2009 Apr;9(4):1598-603. PMID: 19290670

Evseenko D, Schenke-Layland K, Dravid G, Zhu Y, Hao QL, Scholes J, Wang XC, Maclellan WR, Crooks GM. Identification of the critical extracellular matrix proteins that promote human embryonic stem cell assembly.Stem Cells Dev. 2009 Jul-Aug;18(6):919-28. PMID:19021502

French, C.T., Panina, E.M., Yeh,S.H., Griffith, N., Arambula, D.G. and Miller, J.F. The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cellular Microbiology 2009 11(12), 1735–1749. PMID: 19650828.

Fulcher JA, Chang MH, Wang S, Almazan T, Hashimi ST, Eriksson AU, Wen X, Pang M, Baum LG, Singh RR, Lee B.  Galectin-1 co-clusters CD43/CD45 on dendritic cells and induces cell activation and migration through Syk and protein kinase C signaling. J Biol Chem. 2009 Sep 25; 284 (39):26860-70. Epub 2009 Jul 27. PMID: 19635795

Gangalum RK, Bhat SP.  AlphaB-crystallin: a Golgi-associated membrane protein in the developing ocular lens. Invest Ophthalmol Vis Sci. 2009 Jul;50(7):3283-90. Epub 2009 Feb 14.  PMID: 19218604

Gold SM, Sasidhar MV, Morales LB, Du S, Sicotte NL, Tiwari-Woodruff SK, Voskuhl RR. Estrogen treatment decreases matrix metalloproteinase (MMP)-9 in autoimmune demyelinating disease through estrogen receptor alpha (ERalpha).Lab Invest. 2009 Oct;89(10):1076-83. Epub 2009 Aug 10. PMID: 19668239

Gregorian C, Nakashima J, Dry SM, Nghiemphu PL, Smith KB, Ao Y, Dang J, Lawson G, Mellinghoff IK, Mischel PS, Phelps M, Parada LF, Liu X, Sofroniew MV, Eilber FC, Wu H. PTEN dosage is essential for neurofibroma development and malignant transformation. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19479-84. Epub 2009 Oct 21. PMID: 19846776

Hsieh YW, Yang XJ. Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors. Neural Dev. 2009 Aug 17;4:32. PMID: 19686589

Kamei K, Guo S, Yu ZT, Takahashi H, Gschweng E, Suh C, Wang X, Tang J, McLaughlin J, Witte ON, Lee KB, Tseng HR. An integrated microfluidic culture device for quantitative analysis of human embryonic stem cells. Lab Chip. 2009 Feb 21;9(4):555-63. Epub 2008 Nov 20. PMID: 19190791

Klichko Y, Liong M, Choi E, Angelos S, Nel AE, Stoddart JF, Tamanoi F, Zink JI Mesostructured Silica for Optical Functionality, Nanomachines, and Drug Delivery. J Am Ceram Soc. 2009 Jan 1;92(s1):s2-s10. PMID: 19834571

Krejci P, Prochazkova J, Bryja V, Jelinkova P, Pejchalova K, Kozubik A, Thompson LM, Wilcox WR. Fibroblast growth factor inhibits interferon ?-STAT1 and interleukin 6-STAT3 signaling in chondrocytes.  Cell Signal. 2009 Jan;21(1):151-60. PMID: 18950705.

Kubo K, Tsukimura N, Iwasa F, Ueno T, Saruwatari L, Aita H, Chiou WA, Ogawa T. Cellular behavior on TiO2 nanonodular structures in a micro-to-nanoscale hierarchy model. Biomaterials. 2009 Oct;30(29):5319-29. Epub 2009 Jul 9. PMID:19589591

Lei Y, Segura T. DNA delivery from matrix metalloproteinase degradable poly(ethylene glycol) hydrogels to mouse cloned mesenchymal stem cells  Biomaterials. 2009 Jan;30(2):254-65. PMID: 18838159.

Lu Y, Machado HB, Douraghy A, Stout D, Herschman H, Chatziioannou AF. Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework. Opt Express. 2009 Sep 14;17(19):16681-95. PMID: 19770883

Lu Y, Douraghy A, Machado HB, Stout D, Tian J, Herschman H, Chatziioannou AF. Spectrally resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation. Phys Med Biol. 2009 Nov 7;54(21):6477-93. Epub 2009 Oct 9. PMID: 19820264

Ma QL, Yang F, Rosario ER, Ubeda OJ, Beech W, Gant DJ, Chen PP, Hudspeth B, Chen C, Zhao Y, Vinters HV, Frautschy SA, Cole GM.Beta-amyloid oligomers induce phosphorylation of tau and inactivation of insulin receptor substrate via c-Jun N-terminal kinase signaling: suppression by omega-3 fatty acids and curcumin. J Neurosci. 2009 Jul 15;29(28):9078-89. PMID: 19605645

Marvizón JC, Chen W, Murphy N.  Enkephalins, dynorphins, and beta-endorphin in the rat dorsal horn: an immunofluorescence colocalization study. J Comp Neurol. 2009 Nov 1;517(1):51-68. PMID: 19711397.

Merrill AE, Merriman B, Farrington-Rock C, Camacho N, Sebald ET, Funari VA, Schibler MJ, Firestein MH, Cohn ZA, Priore MA, Thompson AK, Rimoin DL, Nelson SF, Cohn DH, Krakow D. Ciliary abnormalities due to defects in the retrograde transport protein DYNC2H1 in short-rib polydactyly syndrome.  Am J Hum Genet. 2009 Apr;84(4):542-9. PMID: 19361615.

Miyako K, Cobb LJ, Francis M, Huang A, Peng B, Pintar JE, Ariga H, Cohen P. PAPA-1 Is a nuclear binding partner of IGFBP-2 and modulates its growth-promoting actions.. Mol Endocrinol. 2009 Feb;23(2):169-75. PMID: 19095771.

Montoya D, Cruz D, Teles RM, Lee DJ, Ochoa MT, Krutzik SR, Chun R, Schenk M, Zhang X, Ferguson BG, Burdick AE, Sarno EN, Rea TH, Hewison M, Adams JS, Cheng G, Modlin RL. Divergence of macrophage phagocytic and antimicrobial programs in leprosy. Cell Host Microbe. 2009 Oct 22;6(4):343-53. PMID:19837374

Nakanishi N, Hartenstein V, Jacobs DK. Development of the rhopalial nervous system in Aurelia sp.1 (Cnidaria, Scyphozoa).Dev Genes Evol. 2009 Jun;219(6):301-17. Epub 2009 Jun 20. PMID: 19543911

Nie M, Xie Y, Loo JA,Courey AJ. Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control, Ras signaling, and early pattern formation. PLoS One. 2009 Jun 16;4(6):e5905.PMID: 19529778.

Ochoa MT, Loncaric A, Krutzik SR, Becker TC, Modlin RL. “Dermal dendritic cells” comprise two distinct populations: CD1+ dendritic cells and CD209+ macrophages. J Invest Dermatol. 2008 Sep;128(9):2225-31. Epub 2008 Mar 13. PMID:18337829

Otoshi CK, Walwyn WM, Tillakaratne NJ, Zhong H, Roy RR, Edgerton VR. Distribution and localization of 5-HT(1A) receptors in the rat lumbar spinal cord after transection and deafferentation. J Neurotrauma. 2009 Apr;26(4):575-84. PMID: 19260781.

Pang M, He J, Johnson P, Baum LG.. CD45-mediated fodrin cleavage during galectin-1 T cell death promotes phagocytic clearance of dying cells. J Immunol. 2009 Jun 1;182(11):7001-8. PMID: 19454697.

Park H, Liu Y, Solis N, Spotkov J, Hamaker J, Blankenship JR, Yeaman MR, Mitchell AP, Liu H, Filler SG.Transcriptional responses of candida albicans to epithelial and endothelial cells. Eukaryot Cell. 2009 Oct;8(10):1498-510. Epub 2009 Aug 21. PMID:19700637

Pinaud F, Michalet X, Iyer G, Margeat E, Moore HP, Weiss S. Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking. Traffic. 2009 Jun;10(6):691-712. Epub 2009 Mar

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Pollard JM, Gatti RA. Clinical radiation sensitivity with DNA repair disorders: an overview. Int J Radiat Oncol Biol Phys. 2009 Aug 1;74(5):1323-31. PMID: 19616740.

Pollard JM, Reboucas JS, Durazo A, Kos I, Fike F, Panni M, Gralla EB, Valentine JS, Batinic-Haberle I, Gatti RA. Radio-protective effects of manganese-containing superoxide dismutase mimics on ataxia telangiectasia cells. Free Radic Biol Med. 2009 Aug 1;47(3):250-60. Epub 2009 Apr 21. PMID: 19389472

Qu Y, Liao L, Li Y, Zhang H, Huang Y, Duan X. Electrically conductive and optically active porous silicon nanowires. Nano Lett. 2009 Dec;9(12):4539-43. PMID:19807130

Reliene R, Pollard JM, Sobol Z, Trouiller B, Gatti RA, Schiestl RH.  N-acetyl cysteine protects against ionizing radiation-induced DNA damage but not against cell killing in yeast and mammals. Mutat Res. 2009 Jun 1;665(1-2):37-43. PMID: 19427509.

Rodríguez JA, Lopez MA, Thayer MC, Zhao Y, Oberholzer M, Chang DD, Kisalu NK, Penichet ML, Helguera G, Bruinsma R, Hill KL, Miao J. Propulsion of African trypanosomes is driven by bihelical waves with alternating chirality separated by kinks. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19322-7. PMID: 19880745

Sakagami K, Gan L, Yang XJ. Distinct effects of Hedgehog signaling on neuronal fate specification and cell cycle progression in the embryonic mouse retina. J Neurosci. 2009 May 27;29(21):6932-44. PMID: 19474320

Sato N, Ueno T, Kubo K, Suzuki T, Tsukimura N, Att W, Yamada M, Hori N, Maeda H, Ogawa T. N-Acetyl cysteine (NAC) inhibits proliferation, collagen gene transcription, and redox stress in rat palatal mucosal cells. Dent Mater. 2009 Dec;25(12):1532-40. Epub 2009 Aug 12. PMID: 19679343

Schenke-Layland K, Rofail F, Heydarkhan S, Gluck JM, Ingle NP, Angelis E, Choi CH, MacLellan WR, Beygui RE, Shemin RJ, Heydarkhan-Hagvall S. The use of three-dimensional nanostructures to instruct cells to produce extracellular matrix for regenerative medicine strategies. Biomaterials. 2009 Sep;30(27):4665-75. Epub 2009 Jun 12. PMID:19524289

Sozmen EG, Kolekar A, Havton LA, Carmichael ST. A white matter stroke model in the mouse: axonal damage, progenitor responses and MRI correlates. J Neurosci Methods. 2009 Jun 15;180(2):261-72. Epub 2009 Mar 31. PMID:19439360

Spence RD, Zhen Y, White S, Schlinger BA, Day LB Recovery of motor and cognitive function after cerebellar lesions in a songbird: role of estrogens. Eur J Neurosci. 2009 Mar;29(6):1225-34. PMID:19302157

Suzuki T, Hori N, Att W, Kubo K, Iwasa F, Ueno T, Maeda H, Ogawa T.Ultraviolet treatment overcomes time-related degrading bioactivity of titanium. Tissue Eng Part A. 2009 Dec;15(12):3679-88. PMID: 19397472

Tan M, Walwyn WM, Evans CJ, Xie CW. p38 MAPK and beta-arrestin 2 mediate functional interactions between endogenous micro-opioid and alpha2A-adrenergic

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Thakor DK, Lin A, Matsuka Y, Meyer EM, Ruangsri S, Nishimura I, Spigelman I. Increased peripheral nerve excitability and local NaV1.8 mRNA up-regulation in painful neuropathy. Mol Pain. 2009 Mar 25;5:14. PMID:19320998

Voskuhl RR, Peterson RS, Song B, Ao Y, Morales LB, Tiwari-Woodruff S, Sofroniew MV. Reactive astrocytes form scar-like perivascular barriers to leukocytes during adaptive immune inflammation of the CNS. J Neurosci. 2009 Sep 16;29(37):11511-22. PMID: 19759299

Xia T, Kovochich M, Liong M, Meng H, Kabehie S, George S, Zink JI, Nel AE. Polyethyleneimine coating enhances the cellular uptake of mesoporous silica nanoparticles and allows safe delivery of siRNA and DNA constructs. ACS Nano. 2009 Oct 27;3(10):3273-86. PMID:19739605

Youn JY, Wang T, Cai H. An ezrin/calpain/PI3K/AMPK/eNOSs1179 signaling cascade mediating VEGF-dependent endothelial nitric oxide production. Circ Res. 2009 Jan 2;104(1):50-9. Epub 2008 Nov 26. PMID: 19038867



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Barat B, Wu AM. Metabolic biotinylation of recombinant antibody by biotin ligase retained in the endoplasmic reticulum. Biomol Eng. 2007 Sep;24(3):283-91. Epub 2007 Feb 15. PMID: 17379573

Beigneux AP, Davies BS, Gin P, Weinstein MM, Farber E, Qiao X, Peale F, Bunting S, Walzem RL, Wong JS, Blaner WS, Ding ZM, Melford K, Wongsiriroj N, Shu X, de Sauvage F, Ryan RO, Fong LG, Bensadoun A, Young SG .Glycosylphosphatidylinositol-anchored high density lipoproteinbinding protein 1 plays a critical role in the lipolytic processing of chylomicrons. Cell Metab.2007 Apr;5(4):279-91. PMID: 17403372

Chen W, Song B, Lao L, Pérez OA, Kim W, Marvizón JC. Comparing analgesia and mu-opioid receptor internalization produced by intrathecal enkephalin: requirement for peptidase inhibition.  Neuropharmacology. 2007 Oct;53(5):664-76.  PMID: 17845806.

Fiala M, Liu PT, Espinosa-Jeffrey A, Rosenthal MJ, Bernard G, Ringman JM, Sayre J, Zhang L, Zaghi J, Dejbakhsh S, Chiang B, Hui J, Mahanian M, Baghaee A, Hong P, Cashman J. Innate immunity and transcription of MGAT-III and Toll-like receptors in Alzheimer’s disease patients are improved by bisdemethoxycurcumin. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12849-54. PMID: 17652175

Gin P, Beigneux AP, Davies B, Young MF, Ryan RO, Bensadoun A, Fong LG, Young SG.Normal binding of lipoprotein lipase, chylomicrons, and apo-AV to GPIHBP1 containing a G56R amino acid substitution. Biochim Biophys Acta. 2007 Dec;1771(12):1464-8. PMID: 17997385

Gylys KH, Fein JA, Yang F Miller CA, Cole GM. Increased cholesterol in Ab-positive nerve terminals from Alzheimer’s disease cortex.  Neurobiol Aging. 2007 Jan;28(1):8-17. PMID: 16332401

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Holowka EP, Sun VZ, Kamei DT, Deming TJ. Polyarginine segments in block copolypeptides drive both vesicular assembly and intracellular delivery. Nat Mater.2007 Jan;6(1):52-7. PMID: 17143266

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