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A list of the published scientific articles which include work done in the ALMS/MSI Facilities.


Gao L, Siu KL, Chalupsky K, Nguyen A, Chen P, Weintraub NL, Galis Z, Cai H. Role of uncoupled endothelial nitric oxide synthase in abdominal aortic aneurysm formation: treatment with folic acid. Hypertension. 2012 Jan;59(1):158-66. Epub 2011 Nov 14. PMID: 22083158.

Hall-Glenn F, De Young RA, Huang B-L, van Handel B, Hofmann JJ, Chen TT, Choi A,Ong JR, Benya PD, Mikkola H, Iruela-Arispe ML, Lyons KM. : CCN2/connective tissue growth factor is essential for pericyte adhesion and endothelial basement membrane formation during angiogenesis. PLoS One. 2012;7(2):e30562. Epub 2012 Feb 20.

Liu PT, Wheelwright M, Teles R, Komisopoulou E, Edfeldt K, Ferguson B, Vazirnia A, Rea T, Sarno EN, Graeber TG, Modlin RL. MicroRNA-21 targets the vitamin D-dependent antimicrobial pathway in leprosy.   Nat Med. 2012 Jan 29;18(2):267-73. doi: 10.1038/nm.2584. PMID:22286305

Sharma S, Santiskulvong C, Bentolila L, Rao J, Dorigo O, Gimzewski JK. Correlative nanomechanical profiling with super resolution F-actin imaging reveals novel insights into mechanisms of cisplatin resistance in ovarian cancer cells. Nanomedicine. 2012 Jul;8(5):757-66. Epub 2011 Oct 22. PMID: 22024198


Ambartsumyan G, Gill RK, Perez SD, Conway D, Vincent J, Dalal Y, Clark AT.Centromere protein A dynamics in human pluripotent stem cell self-renewal, differentiation and DNA damage.Hum Mol Genet. 2010 Oct 15;19(20):3970-82. Epub2010 Jul 22. PMID:20650959

Ascenzi MG, Blanco C, Drayer I, Kim H, Wilson R, Retting KN, Lyons KM, Mohler G.Effect of localization, length and orientation of chondrocytic primary cilium on murine growth plate organization. J Theor Biol. 2011 Sep 21;285(1):147-55. Epub 2011 Jun 23

Barat B, Kenanova VE, Olafsen T, Wu AM. Evaluation of two internalizing carcinoembryonic antigen reporter genes for molecular imaging. Mol Imaging Biol. 2011 Jun;13(3):526-35. PMID: 20628903

Biag J, Huang Y, Gou L, Askarinam A, Hahn JD, Toga AW, Hintiryan H, Dong HW.Cyto- and chemoarchitecture of the hypothalamic paraventricular nucleus in the C57BL/6J male mouse: A study of immunostaining and multiple fluorescent tract tracing. J Comp Neurol. 2011 Jun 14. doi: 10.1002/cne.22698. [Epub ahead of print] PMID:21674499

Bimonte S, De Angelis A, Quagliata L, Giusti F, Tammaro R, Dallai R, Ascenzi MG, Diez-Roux G, Franco B. Ofd1 is required in limb bud patterning and endochondral bone development. Dev Biol. 2011 Jan 15;349(2):179-91. Epub 2010 Oct 14. PMID: 20920500

Coffinier C, Jung HJ, Nobumori C, Chang S, Tu Y, Barnes RH 2nd, Yoshinaga Y, de Jong PJ, Vergnes L, Reue K, Fong LG, Young SG. Deficiencies in lamin B1 and lamin B2 cause neurodevelopmental defects and distinct nuclear shape abnormalities in neurons Mol Biol Cell. 2011 Oct 5. [Epub ahead of print] PMID: 21976703

Du L, Kayali R, Bertoni C, Fike F, Hu H, Iversen PL, Gatti RA. Arginine-rich cell-penetrating peptide dramatically enhances AMO-mediated ATM aberrant splicing correction and enables delivery to brain and cerebellum. Hum Mol Genet. 2011 Aug 15;20(16):3151-60. Epub 2011 May 16. PMID:21576124

Du S, Sandoval F, Trinh P, Umeda E, Voskuhl R. Estrogen receptor-β ligand treatment modulates dendritic cells in the target organ during autoimmune demyelinating disease. Eur J Immunol. 2011 Jan;41(1):140-50. doi: 10.1002/eji.201040796. Epub 2010 Dec 9. PMID: 21182085

Ferris DP, Lu J, Gothard C, Yanes R, Thomas CR, Olsen JC, Stoddart JF, Tamanoi F, Zink JI. Synthesis of biomolecule-modified mesoporous silica nanoparticles for targeted hydrophobic drug delivery to cancer cells. Small. 2011 Jul 4;7(13):1816-26. doi: 10.1002/smll.201002300. Epub 2011 May 19. PMID: 21595023

Gangalum RK, Atanasov IC, Zhou ZH, Bhat SP. AlphaB-crystallin is found in detergent-resistant membrane microdomains and is secreted via exosomes from human retinal pigment epithelial cells.J Biol Chem. 2011 Feb 4;286(5):3261-9. Epub 2010 Nov 19. PMID: 21097504

Geisbauer CL, Wu BM, Dunn JC. Transplantation of Enteric Cells into the Aganglionic Rodent Small Intestines. J Surg Res. 2011 Jun 7. [Epub ahead of print] PMID: 21704327

Gluck JM, Rahgozar P, Ingle NP, Rofail F, Petrosian A, Cline MG, Jordan MC, Roos KP, Maclellan WR, Shemin RJ, Heydarkhan-Hagvall S. Hybrid coaxial electrospun nanofibrous scaffolds with limited immunological response created for tissue engineering. J Biomed Mater Res B Appl Biomater. 2011 Oct;99(1):180-90. doi: 10.1002/jbm.b.31885. Epub 2011 Jul 5. PMID: 21732530

Gu Z, Zhao M, Sheng Y, Bentolila LA, Tang Y.   Detection of mercury ion by infrared fluorescent protein and its hydrogel-based paper assay.. Anal Chem. 2011 Mar 15;83(6):2324-9. Epub 2011 Feb 16.PMID:    21323346 

Hori N, Iwasa F, Tsukimura N, Sugita Y, Ueno T, Kojima N, Ogawa T. Effects of UV photofunctionalization on the nanotopography enhanced initial bioactivity of titanium. Acta Biomater. 2011 Oct;7(10):3679-91. Epub 2011 Jul 1. PMID:21723964 

Issa FA, Mazzochi C, Mock AF, Papazian DM. Spinocerebellar ataxia type 13 mutant potassium channel alters neuronal excitability and causes locomotor deficits in zebrafish. J Neurosci. 2011 May 4;31(18):6831-41. PMID: 21543613

Iwasa F, Tsukimura N, Sugita Y, Kanuru RK, Kubo K, Hasnain H, Att W, Ogawa T. TiO2 micro-nano-hybrid surface to alleviate biological aging of UV-photofunctionalized titanium. Int J Nanomedicine. 2011;6:1327-41. Epub 2011 Jun 28. PMID: 21760728 

Iyer G, Pinaud F, Xu J, Ebenstein Y, Li J, Chang J, Dahan M, Weiss S. Aromatic aldehyde and hydrazine activated Peptide coated quantum dots for easy bioconjugation and live cell imaging. Bioconjug Chem. 2011 Jun 15;22(6):1006-11. Epub 2011 May 16. PMID: 21553893

Iyer G, Xu J, Weiss S. Single-step conjugation of antibodies to quantum dots for labeling cell surface receptors in mammalian cells. Methods Mol Biol. 2011;751:553-63. PMID: 21674354

Kawamata N, Pennella MA, Woo JL, Berk AJ, Koeffler HP.Dominant-negative mechanism of leukemogenic PAX5 fusions. Oncogene. 2011 Jul 18. doi: 10.1038/onc.2011.291. [Epub ahead of print] PMID: 21765475

Khorasani H, Zheng Z, Nguyen C, Zara J, Zhang X, Wang J, Ting K, Soo C. A quantitative approach to scar analysis. Am J Pathol. 2011 Feb;178(2):621-8.PMID: 21281794

Kim S, Streets AM, Lin RR, Quake SR, Weiss S, Majumdar DS. High-throughput single-molecule optofluidic analysis, Nat Methods. 2011 Mar;8(3):242-5. Epub 2011 Feb 6.PMID: 21297618

Kitamura E, Gribanova YE, Farber DB. Regulation of retinoschisin secretion in Weri-Rb1 cells by the F-actin and microtubule cytoskeleton. PLoS One. 2011;6(6):e20707. Epub 2011 Jun 27. PMID:  21738583

Lei Y, Rahim M, Ng Q, Segura T. Hyaluronic acid and fibrin hydrogels with concentrated DNA/PEI polyplexes for local gene delivery. J Control Release. 2011 Aug 10;153(3):255-61. Epub 2011 Feb 2. PMID: 21295089

Lin S, Zhao Y, Xia T, Meng H, Ji Z, Liu R, George S, Xiong S, Wang X, Zhang H, Pokhrel S, Mädler L, Damoiseaux R, Lin S, Nel AE. High Content Screening in Zebrafish Speeds up Hazard Ranking of Transition Metal Oxide Nanoparticles.ACS Nano. 2011 Sep 27;5(9):7284-7295. Epub 2011 Aug 25. PMID: 21851096 http://pubs.

Lu JZ, Boado RJ, Hui EK, Zhou QH, Pardridge WM. Expression in CHO cells and pharmacokinetics and brain uptake in the Rhesus monkey of an IgG-iduronate-2-sulfatase fusion protein. Biotechnol Bioeng. 2011 Aug;108(8):1954-64. doi: 10.1002/bit.23118. Epub 2011 Mar 15. PMID: 21351076

Lu Y, Machado HB, Bao Q, Stout D, Herschman H, Chatziioannou AF. In vivo mouse bioluminescence tomography with radionuclide-based imaging validation. Mol Imaging Biol. 2011 Feb;13(1):53-8. PMID: 20464517

Ma QL, Yang F, Rosario ER, Ubeda OJ, Beech W, Gant DJ, Chen PP, Hudspeth B, Chen C, Zhao Y, Vinters HV, Frautschy SA, Cole GM. Beta-amyloid oligomers induce phosphorylation of tau and inactivation of insulin receptor substrate via c-Jun N-terminal kinase signaling: suppression by omega-3 fatty acids and curcumin. J Neurosci. 2009 Jul 15;29(28):9078-89. PMID:19605645

Maiti P, Piacentini R, Ripoli C, Grassi C, Bitan G. Surprising toxicity and assembly behaviour of amyloid β-protein oxidized to sulfone. Biochem J. 2011 Jan 15;433(2):323-32. PMID: 21044048

Meng H, Yang S, Li Z, Xia T, Chen J, Ji Z, Zhang H, Wang X, Lin S, Huang C, Zhou ZH, Zink JI, Nel AE. Aspect ratio determines the quantity of mesoporous silica nanoparticle uptake by a small GTPase-dependent macropinocytosis mechanism. ACS Nano. 2011 Jun 28;5(6):4434-47. Epub 2011 May 12. PMID:21563770

Mengatto CM, Mussano F, Honda Y, Colwell CS, Nishimura I. Circadian rhythm and cartilage extracellular matrix genes in osseointegration: a genome-wide screening of implant failure by vitamin D deficiency. PLoS One. 2011 Jan 11;6(1):e15848. PMID: 21264318.

Minamikawa H, Yamada M, Deyama Y, Suzuki K, Kaga M, Yawaka Y, Ogawa T. Effect of N-acetylcysteine on rat dental pulp cells cultured on mineral trioxide aggregate. J Endod. 2011 May;37(5):637-41. Epub 2011 Mar 22. PMID: 21496663

Mishra A, Lai GH, Schmidt NW, Sun VZ, Rodriguez AR, Tong R, Tang L, Cheng J, Deming TJ, Kamei DT, Wong GC. Translocation of HIV TAT peptide and analogues induced by multiplexed membrane and cytoskeletal interactions. Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):16883-8. Epub 2011 Oct 3. PMID:21969533

Nakatsu MN, Ding Z, Ng MY, Truong TT, Yu F, Deng SX. Wnt/β-catenin signaling regulates proliferation of human cornea epithelial stem/progenitor cells.Invest Ophthalmol Vis Sci. 2011 Jul 1;52(7):4734-41. Print 2011 Jun. PMID: 21357396

Rodríguez JA, Luria-Pérez R, López-Valdés HE, Casero D, Daniels TR, Patel S, Avila D, Leuchter R, So S, Ortiz-Sánchez E, Bonavida B, Martínez-Maza O, Charles AC, Pellegrini M, Helguera G, Penichet ML. Lethal iron deprivation induced by non-neutralizing antibodies targeting transferrin receptor 1 in malignant B cells. Leuk Lymphoma. 2011 Nov;52(11):2169-78. Aug 28. [Epub ahead of print] PMID:1870996

Ruangsri S, Lin A, Mulpuri Y, Lee K, Spigelman I, Nishimura I<>. Relationship of axonal voltage-gated sodium channel 1.8 (NaV1.8) mRNA accumulation to sciatic nerve injury-induced painful neuropathy in rats. J Biol Chem. 2011 Nov 18;286(46):39836-47. Epub 2011 Sep 30. PMID:21965668

Schenke-Layland K, Nsair A, Van Handel B, Angelis E, Gluck JM, Votteler M, Goldhaber JI, Mikkola HK, Kahn M, Maclellan WR. Recapitulation of the embryonic cardiovascular progenitor cell niche. Biomaterials. 2011 Apr;32(11):2748-56. Epub 2011 Jan 22. PMID: 21257198

Sdek P, Zhao P, Wang Y, Huang CJ, Ko CY, Butler PC, Weiss JN, Maclellan WR. Rb and p130 control cell cycle gene silencing to maintain the postmitotic phenotype in cardiac myocytes. J Cell Biol. 2011 Aug 8;194(3):407-23. PMID: 21825075

Sokolow S, Luu SH, Headley AJ, Hanson AY, Kim T, Miller CA, Vinters HV, Gylys KH. High levels of synaptosomal Na(+)-Ca(2+) exchangers (NCX1, NCX2, NCX3) co-localized with amyloid-beta in human cerebral cortex affected by Alzheimer's disease. Cell Calcium. 2011 Apr;49(4):208-16. Epub 2011 Mar 5. PMID: 21382638

Sokolow S, Luu SH, Nandy K, Miller CA, Vinters HV, Poon WW, Gylys KH. Preferential accumulation of amyloid-beta in presynaptic glutamatergic terminals (VGluT1 and VGluT2) in Alzheimer's disease cortex. Neurobiol Dis. 2011 Sep 3. doi:10.1016/j.nbd.2011.08.027 [Epub ahead of print] PMID: 21914482

Spence RD, Hamby ME, Umeda E, Itoh N, Du S, Wisdom AJ, Cao Y, Bondar G, Lam J, Ao Y, Sandoval F, Suriany S, Sofroniew MV, Voskuhl RR. Neuroprotection mediated through estrogen receptor-alpha in astrocytes. Proc Natl Acad Sci U S A. 2011 May 24;108(21):8867-72. Epub 2011 May 9. PMID: 21555578

Sugita Y, Ishizaki K, Iwasa F, Ueno T, Minamikawa H, Yamada M, Suzuki T, Ogawa T. Effects of pico-to-nanometer-thin TiO(2) coating on the biological properties of microroughened titanium. Biomaterials. 2011 Nov;32(33):8374-84. Epub 2011 Aug 15. PMID: 21840046

Sun VZ, Li Z, Deming TJ, Kamei DT. Intracellular fates of cell-penetrating block copolypeptide vesicles. Biomacromolecules. 2011 Jan 10;12(1):10-3. Epub 2010 Dec 3. PMID:21128599

Tao J, Wu H, Lin Q, Wei W, Lu XH, Cantle JP, Ao Y, Olsen RW, Yang XW, Mody I, Sofroniew MV, Sun YE. Deletion of astroglial Dicer causes non-cell-autonomous neuronal dysfunction and degeneration. J Neurosci. 2011 Jun 1;31(22):8306-19. PMID: 21632951 

Tsukimura N, Yamada M, Iwasa F, Minamikawa H, Att W, Ueno T, Saruwatari L, Aita H, Chiou WA, Ogawa T. Synergistic effects of UV photofunctionalization and micro-nano hybrid topography on the biological properties of titanium. Biomaterials. 2011 Jul;32(19):4358-68. Epub 2011 Mar 21. PMID: 21421270

Ueno T, Yamada M, Sugita Y, Ogawa T. N-acetyl cysteine protects TMJ chondrocytes from oxidative stress. J Dent Res. 2011 Mar;90(3):353-9. Epub 2010 Nov 18. PMID: 21088145

Wen X, Yang JQ, Kim PJ, Singh RR. Homeostatic regulation of marginal zone B cells by invariant natural killer T cells. PLoS One. 2011;6(10):e26536. Epub 2011 Oct 26. PMID: 22046304

Wu TH, Teslaa T, Kalim S, French CT, Moghadam S, Wall R, Miller JF, Witte ON, Teitell MA, Chiou PY. Photothermal nanoblade for large cargo delivery into mammalian cells.. Anal Chem. 2011 Feb 15;83(4):1321-7. Epub 2011 Jan 19.PMID:  21247066

Xia T, Zhao Y, Sager T, George S, Pokhrel S, Li N, Schoenfeld D, Meng H, Lin S, Wang X, Wang M, Ji Z, Zink JI, Madler L, Castranova V, Nel AE. Decreased dissolution of ZnO by iron doping yields nanoparticles with reduced toxicity in the rodent lung and zebrafish embryos. ACS Nano. 2011 Feb 22;5(2):1223-35. Epub 2011 Jan 20. PMID: 21250651

Xue M, Zhong X, Shaposhnik Z, Qu Y, Tamanoi F, Duan X, Zink JI. pH-Operated mechanized porous silicon nanoparticles.J Am Chem Soc. 2011 Jun 15;133(23):8798-801. Epub 2011 May 24. PMID:21595466

Yamada M, Ishihara K, Ogawa T, Sakurai K. The inhibition of infection by wound pathogens on scaffold in tissue-forming process using N-acetyl cysteine. Biomaterials. 2011 Nov;32(33):8474-85. Epub 2011 Aug 12. PMID: 21840048

Zhang H, Xia T, Meng H, Xue M, George S, Ji Z, Wang X, Liu R, Wang M, France B, Rallo R, Damoiseaux R, Cohen Y, Bradley KA, Zink JI, Nel AE. Differential expression of syndecan-1 mediates cationic nanoparticle toxicity in undifferentiated versus differentiated normal human bronchial epithelial cells. ACS Nano. 2011 Apr 26;5(4):2756-69. Epub 2011 Mar 2. PMID: 21366263 

Zhang H, Li Y, Lin Y, Huang Y, Duan X. Composition tuning the upconversion emission in NaYF4:Yb/Tm hexaplate nanocrystals. Nanoscale. 2011 Mar;3(3):963-6. Epub 2011 Jan 25. PMID: 21264435

Zhang H, Xu D, Huang Y, Duan X.  Highly spectral dependent enhancement of upconversion emission with sputtered gold island films. Chem Commun (Camb). 2011 Jan 21;47(3):979-81. Epub 2010 Nov 16. PMID: 21079884

Zhang J, Lei Y, Dhaliwal A, Ng QK, Du J, Yan M, Lu Y, Segura T. Protein-polymer nanoparticles for nonviral gene delivery. Biomacromolecules. 2011 Apr 11;12(4):1006-14. Epub 2011 Feb 16. PMID: 21323308

Zhang J, Tokatlian T, Zhong J, Ng QK, Patterson M, Lowry WE, Carmichael ST, Segura T. Physically Associated Synthetic Hydrogels with Long-Term Covalent Stabilization for Cell Culture and Stem Cell Transplantation.Adv Mater. 2011 Oct 14. doi: 10.1002/adma.201103349. [Epub ahead of print] PMID: 21997799

Zheng Z, Nguyen C, Zhang X, Khorasani H, Wang JZ, Zara JN, Chu F, Yin W, Pang S, Le A, Ting K, Soo C. Delayed wound closure in fibromodulin-deficient mice is associated with increased TGF-β3 signaling. J Invest Dermatol. 2011 Mar;131(3):769-78. Epub 2010 Dec 30. PMID: 21191417

Zou X, Shen J, Chen F, Ting K, Zheng Z, Pang S, Zara JN, Adams JS, Soo C, Zhang X. FEBS Lett. 2011 Aug 4;585(15):2410-8. Epub 2011 Jun 26. PMID:  21723284


Alanay Y, Avaygan H, Camacho N, Utine GE, Boduroglu K, Aktas D, Alikasifoglu M, Tuncbilek E, Orhan D, Bakar FT, Zabel B, Superti-Furga A, Bruckner-Tuderman L, Curry CJ, Pyott S, Byers PH, Eyre DR, Baldridge D, Lee B, Merrill AE, Davis EC, Cohn DH, Akarsu N, Krakow D.Mutations in the gene encoding the RER protein FKBP65 cause autosomal-recessive osteogenesis imperfecta. Am J Hum Genet. 2010 Apr 9;86(4):551-9. Epub 2010 Apr 1. PMID:20362275

Belanto JJ, Diaz-Perez SV, Magyar CE, Maxwell MM, Yilmaz Y, Topp K, Boso G, Jamieson CH, Cacalano NA, Jamieson CA. Dexamethasone induces dysferlin in myoblasts and enhances their myogenic differentiation. Neuromuscul Disord. 2010 Feb;20(2):111-21. Epub 2010 Jan 18. PMID: 20080405.

Bentolila, L. A. Direct in situ hybridization with oligonucleotide functionalized quantum dot probes. Methods Mol. Biol. 2010; 659:147-163.PMID: 20809309

Bishop JR, Passos-Bueno MR, Fong L, Stanford KI, Gonzales JC, Yeh E, Young SG, Bensadoun A, Witztum JL, Esko JD, Moulton KS. Deletion of the basement membrane heparan sulfate proteoglycan type XVIII collagen causes hypertriglyceridemia in mice and humans. PLoS One. 2010 Nov 10;5(11):e13919. PMID: 21085708

Cho JS, Pietras EM, Garcia NC, Ramos RI, Farzam DM, Monroe HR, Magorien JE, Blauvelt A, Kolls JK, Cheung AL, Cheng G, Modlin RL, Miller LS. 2010. IL-17 is essential for host defense against cutaneous Staphylococcus aureus infection in mice. 2010 J Clin Invest. May 3;120(5):1762-73. PMID: 20364087 

Coffinier C, Jung HJ, Li Z, Nobumori C, Yun U, Farber EA, Davies BS, Weinstein MM, Yang SH, Lammerding J, Farahani JN, Bentolila LA, Fong LG, Young SG. Direct synthesis of lamin A, bypassing prelamin A processing, causes misshapen nuclei in fibroblasts but no detectable pathology in mice. J.Biol.Chem. 2010 Jul 2;285(27):20818-26. Epub 2010 May3.

Coffinier C, Chang SY, Nobumori C, Tu Y, Farber EA, Toth JI, Fong LG, Young SG. Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency.  2010 PNAS; Mar 16: 107(11):5076-81. Epub 2010 Feb 9. PMID: 20145110

Davies BS, Beigneux AP, Barnes RH , Tu Y, Gin P, Weinstein MM, Nobumori C, Nyren R, Goldberg I, Olivecrona G, Bensadoun A, Young SG, Fong LG. GPIHBP1 is responsible for the entry of lipoprotein lipase into capillaries. 2010 Cell Metab  Jul 4;12(1):42-52.

Du S, Sandoval F, Trinh P, Voskuhl RR. Additive effects of combination treatment with anti-inflammatory and neuroprotective agents in experimental autoimmune encephalomyelitis. J Neuroimmunol. 2010 Feb 26;219(1-2):64-74. Epub 2009 Dec 14. PMID: 20006910

Ebenstein, Y. and L A. Bentolila. Single-molecule detection: Focusing on the objective. 2010 Nat Nanotechnol. Feb;5(2):99-100. PMID: 20130586

Edfeldt K, Liu PT,Chunb R, Fabria M,  Schenka M,  Wheelwright M, Keegan C, Krutzika SR, Adams JS, Hewison M, Modlin RL. T-cell cytokines differentially control human monocyte antimicrobial responses by regulating vitamin D metabolism. Proc Natl Acad Sci U S A. 2010 December 28; 107(52): 22593¨C22598. PMCID: PMC3012480

Evseenko D, Zhu Y, Schenke-Layland K, Kuo J, Latour B, Ge S, Scholes J, Dravid G, Li X, MacLellan WR, Crooks GM. Mapping the first stages of mesoderm commitment during differentiation of human embryonic stem cells. Proc Natl Acad Sci U S A. 2010 Aug 3;107(31):13742-7. Epub 2010 Jul 19. PMID: 20643952

Farahani JN, Schibler MJ,  Bentolila LA  Stimulated Emission Depletion (STED) Microscopy: from Theory to Practice.  In:  Microscopy: Science, Technology, Applications and Education.  Badajoz, Spain.  A. Méndez-Vilas and J. Díaz (Eds.) ©FORMATEX 2010 pp. 1539-1547. http:/

Garner OB, Aguilar HC, Fulcher JA, Levroney EL, Harrison R, Wright L, Robinson LR, Aspericueta V, Panico M, Haslam SM, Morris HR, Dell A, Lee B, Baum LG. Endothelial galectin-1 binds to specific glycans on nipah virus fusion protein and inhibits maturation, mobility, and function to block syncytia formation. PLoS Pathog. 2010 Jul 15;6(7):e1000993. PMID:20657665

Hori N, Iwasa F, Ueno T, Takeuchi K, Tsukimura N, Yamada M, Hattori M, Yamamoto A, Ogawa T. Selective cell affinity of biomimetic micro-nano-hybrid structured TiO2 overcomes the biological dilemma of osteoblasts. Dent Mater. 2010 Apr;26(4):275-87. Epub 2009 Dec 16. PMID: 20006380

Hori N, Ueno T, Suzuki T, Yamada M, Att W, Okada S, Ohno A, Aita H, Kimoto K, Ogawa T. Ultraviolet light treatment for the restoration of age-related degradation of titanium bioactivity. Int J Oral Maxillofac Implants. 2010 Jan-Feb;25(1):49-62. PMID: 20209187

Hutnick LK, Huang X, Loo TC, Ma Z, Fan G.Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by a DNA methylation-independent mechanism. J Biol Chem. 2010 Jul 2;285(27):21082-91. Epub 2010 Apr 19. PMID: 20404320

Iwasa F, Hori N, Ueno T, Minamikawa H, Yamada M, Ogawa T. Enhancement of osteoblast adhesion to UV-photofunctionalized titanium via an electrostatic mechanism. Biomaterials. 2010 Apr;31(10):2717-27. Epub 2009 Dec 24. PMID: 20035996

Iyer G, Michalet X, Chang YP, Weiss S. Tracking single proteins in live cells using single-chain antibody fragment-fluorescent quantum dot affinity pair. Methods Enzymol. 2010;475:61-79. PMID:  20627153

Jumabay M, Zhang R, Yao Y, Goldhaber JI, Boström KI.  Spontaneously beating cardiomyocytes derived from white mature adipocytes. Cardiovasc Res. 2010 Jan 1;85(1):17-27. PMID:  19643806

Knight MJ, Joubert MK, Plotkowski ML, Kropat J, Gingery M, Sakane F, Merchant SS, Bowie JU. Zinc binding drives sheet formation by the SAM domain of diacylglycerol kinase δ. Biochemistry. 2010 Nov 9;49(44):9667-76. PMID:20857926

Krejci P, Prochazkova J, Smutny J, Chlebova K, Lin P, Aklian A, Bryja V, Kozubik A, Wilcox WR. FGFR3 signaling induces a reversible senescence phenotype in chondrocytes similar to oncogene-induced premature senescence. Bone. 2010 Jul;47(1):102-10. Epub 2010 Mar 31. PMID: 20362703

Lee BY, Jethwaney D, Schilling B, Clemens DL, Gibson BW, Horwitz MA. The Mycobacterium bovis bacille Calmette-Guerin phagosome proteome. Mol Cell Proteomics. 2010 Jan;9(1):32-53. Epub 2009 Oct 7. PMID: 19815536

Li S, Overman JJ, Katsman D, Kozlov SV, Donnelly CJ, Twiss JL, Giger RJ, Coppola G, Geschwind DH, Carmichael ST. An age-related sprouting transcriptome provides molecular control of axonal sprouting after stroke. Nat Neurosci. 2010 Dec;13(12):1496-504. Epub 2010 Nov 7. PMID: 21057507

Lin A, Hokugo A, Choi J, Nishimura I.Small cytoskeleton-associated molecule, fibroblast growth factor receptor 1 oncogene partner 2/wound inducible transcript-3.0 (FGFR1OP2/wit3.0), facilitates fibroblast-driven wound closure. Am J Pathol. 2010 Jan;176(1):108-21. Epub 2009 Dec 3. PMID:19959814

Lu J, Liong M, Li Z, Zink JI, Tamanoi F. Biocompatibility, biodistribution, and drug-delivery efficiency of mesoporous silica nanoparticles for cancer therapy in animals. Small. 2010 Aug 16;6(16):1794-805. PMID: 20623530

Matsumoto H, Kimura T, Haga K, Kasahara N, Anton P, McGowan I. Effective in vivo and ex vivo gene transfer to intestinal mucosa by VSV-G-pseudotyped lentiviral vectors. BMC Gastroenterol. 2010 May 11;10:44.  PMID: 20459837

Meng H, Liong M, Xia T, Li Z, Ji Z, Zink JI, Nel AE. Engineered design of mesoporous silica nanoparticles to deliver doxorubicin and P-glycoprotein siRNA to overcome drug resistance in a cancer cell line. ACS Nano. 2010 Aug 24;4(8):4539-50. PMID:20731437

Meng H, Xue M, Xia T, Zhao YL, Tamanoi F, Stoddart JF, Zink JI, Nel AE. Autonomous in vitro anticancer drug release from mesoporous silica nanoparticles by pH-sensitive nanovalves. J Am Chem Soc. 2010 Sep 15;132(36):12690-7. PMID:20718462

Minamikawa H, Yamada M, Iwasa F, Ueno T, Deyama Y, Suzuki K, Yawaka Y, Ogawa T. Amino acid derivative-mediated detoxification and functionalization of dual cure dental restorative material for dental pulp cell mineralization. Biomaterials. 2010 Oct;31(28):7213-25. PMID:  20621351

Miyauchi T, Yamada M, Yamamoto A, Iwasa F, Suzawa T, Kamijo R, Baba K, Ogawa T. The enhanced characteristics of osteoblast adhesion to photofunctionalized nanoscale TiO2 layers on biomaterials surfaces. Biomaterials. 2010 May;31(14):3827-39. Epub 2010 Feb 13. PMID: 20153521

Mussano F, Lee KJ, Zuk P, Tran L, Cacalano NA, Jewett A, Carossa S, Nishimura I. Differential effect of ionizing radiation exposure on multipotent and differentiation-restricted bone marrow mesenchymal stem cells. J Cell Biochem. 2010 Oct 1;111(2):322-32. PMID:20506196

Nakanishi N, Yuan D, Hartenstein V, Jacobs DK. Evolutionary origin of rhopalia: insights from cellular-level analyses of Otx and POU expression patterns in the developing rhopalial nervous system. Evol Dev. 2010 Jul-Aug;12(4):404-15. PMID: 20618436

Ochoa MT,  Teles R, Haas BE, Zaghi D, Li H,  Sarno EN, Rea TH, Modlin RL, Lee DJ. A role for interleukin-5 in promoting increased immunoglobin M at the site of disease in leprosy. Immunology, November 2010, Volume 131 Issue 3, p. 405-414; PMID: 20561085 PMCID: PMC2996561  

Olafsen T, Young SG, Davies BS, Beigneux AP, Kenanova VE, Voss C, Young G, Wong KP, Barnes RH, Tu Y, Weinstein MM, Nobumori C, Huang SC, Goldberg IJ, Bensadoun A, Wu AM, Fong LG Unexpected expression pattern for GPIHBP1 in mouse tissues revealed by positron emission tomography scanning. J. Biol. Chem. 2010 Dec 10;285(50):39239-48. Epub 2010 Sep 30.  

Pennella MA, Liu Y, Woo LJ,  Kim CA,  Berk AJ. Adenovirus E1B 55-kilodalton protein is a p53-SUMO1 E3ligase that represses p53 and stimulates its nuclear export through interactions with promyeloctic leukemia nuclear bodies. J Virol., December 2010, p. 12210-12225, Vol. 84, No. 23. PMID: 20861261. PMCID: PMC2976411

Pradhan AA, Walwyn W, Nozaki C, Filliol D, Erbs E, Matifas A, Evans C, Kieffer BL. Ligand-directed trafficking of the δ-opioid receptor in vivo: two paths toward analgesic tolerance. J Neurosci. 2010 Dec 8;30(49):16459-68. PMID:21147985

Sato N, Kubo K, Yamada M, Hori N, Suzuki T, Maeda H, Ogawa T. Osteoblast mechanoresponses on Ti with different surface topographies. J Dent Res. 2009 Sep;88(9):812-6. PMID: 19767577

Srikanth S, Jung H-J, Kim K-D , Souda P, Whitelegge J, Gwack Y.  A novel EF-hand protein, CRACR2A, is a cytosolic Ca2+ sensor that stabilizes CRAC channels in T cells. Nat Cell Biol. 2010 May;12(5):436-46. PMID: 20418871.

Suzuki T, Kubo K, Hori N, Yamada M, Kojima N, Sugita Y, Maeda H, Ogawa T. Nonvolatile buffer coating of titanium to prevent its biological aging and for drug delivery. Biomaterials. 2010 Jun;31(18):4818-28. Epub 2010 Mar 28. PMID: 20350765

Teles RMB, Krutzik SR,  Ochoa MT, Oliveira RB, Sarno EN,Modlin RL. Interleukin-4 regulates the expression of CD209 and subsequent uptake of Mycobacterium leprae by Schwann cells in human leprosy. Inf. and Imm. November 2010, p. 4634-4643, Vol. 78, No. 11; PMID: 20713631 PMCID: PMC2976321

Winchell CJ, Valencia JE, Jacobs DK. Confocal analysis of nervous system architecture in direct-developing juveniles of Neanthes arenaceodentata (Annelida, Nereididae).Front Zool. 2010 Jun 16;7:17. PMID: 20553614

Yamada M, Kubo K, Ueno T, Iwasa F, Att W, Hori N, Ogawa T. Alleviation of commercial collagen sponge- and membrane-induced apoptosis and dysfunction in cultured osteoblasts by an amino acid derivative. Int J Oral Maxillofac Implants. 2010 Sep-Oct;25(5):939-46. PMID: 20862407

Yamada M, Miyauchi T, Yamamoto A, Iwasa F, Takeuchi M, Anpo M, Sakurai K, Baba K, Ogawa T. Enhancement of adhesion strength and cellular stiffness of osteoblasts on mirror-polished titanium surface by UV-photofunctionalization. Acta Biomater. 2010 Dec;6(12):4578-88. Epub 2010 Jul 13. PMID: 20633705 

Yan M, Du J, Gu Z, Liang M, Hu Y, Zhang W, Priceman S, Wu L, Zhou ZH, Liu Z, Segura T, Tang Y, Lu Y. A novel intracellular protein delivery platform based on single-protein nanocapsules. Nat Nanotechnol. 2010 Jan;5(1):48-53. Epub 2009 Nov 22. PMID: 19935648

Yang, J., Kickhoefer, V. A.,  Ng, B. C.,Gopal, A., Bentolila, L. A., John, S., Tolbert, S. H., and Rome, L. H. 2010. Vaults are dynamically unconstrained cytoplasmic nanoparticles capable of rapid half subunit exchange in vivo. ACS Nano.  4 (12):7229-7240. PMID: 21121616

Zhang H, Li Y, Ivanov IA, Qu Y, Huang Y, Duan X.  Plasmonic modulation of the upconversion fluorescence in NaYF(4):Yb/Tm hexaplate nanocrystals using gold nanoparticles or nanoshells. 2010 Angew Chem Int Ed Engl. Mar 16;49(16):2865-2868. PMID:  20235253

Zhong J, Chan A, Morad L, Kornblum HI, Fan G, Carmichael ST. Hydrogel matrix to support stem cell survival after brain transplantation in stroke.Neurorehabil Neural Repair. 2010 Sep;24(7):636-44. Epub 2010 Apr 27. PMID: 20424193


Adelson DW, Lao L, Zhang G, Kim W, Marvizón JCG. Substance P release and neurokinin 1 receptor activation in the rat spinal cord increases with the firing frequency of C-fibers. Neuroscience. 2009 Jun 30;161(2):538-53. Epub 2009 Mar 29. PMID: 19336248.

Aita H, Att W, Ueno T, Yamada M, Hori N, Iwasa F, Tsukimura N, Ogawa T. Ultraviolet light-mediated photofunctionalization of titanium to promote human mesenchymal stem cell migration, attachment, proliferation and differentiation. Acta Biomater. 2009 Oct;5(8):3247-57. Epub 2009 May 4 PMID: 19427421.

Aita H, Att W, Ueno T, Yamada M, Hori N, Iwasa F, Tsukimura N, Ogawa T. Ultraviolet light-mediated photofunctionalization of titanium to promote human mesenchymal stem cell migration, attachment, proliferation and differentiation. Acta Biomater. 2009 Oct;5(8):3247-57. Epub 2009 May 4. PMID:19427421

Aita H, Hori N Takeuchi M, Suzuki T,Yamada M, Anpo M, Ogawa T. The effect of ultraviolet functionalization of titanium on integration with bone. Biomaterials. 2009 Feb;30(6):1015-25. PMID: 19042016.

Ascenzi, M.-G., Gill, J. and Lomovtsev, A.)  Erratum to ‘‘Orientation of collagen at the osteocyte lacunae in human secondary osteons’’ J. Biomech. 41/16 2008 3426–3435 J. Biomech. 2009  Erratum, 42, 661-662. (no PMID)

Ascenzi, M.-G., Gill, J. and Lomovtsev, A.)  Erratum to ‘‘Orientation of collagen at the osteocyte lacunae in human secondary osteons’’ J. Biomech. 41/16 2008 3426–3435 J Biomech. 2009 Erratum, Aug 7;42(11):1792.  (no PMID)

Att W, Hori N, Iwasa F, Yamada M, Ueno T, Ogawa T. The effect of UV-photofunctionalization on the time-related bioactivity of titanium and chromium-cobalt alloys. Biomaterials. 2009 Sep;30(26):4268-76. Epub 2009 May 26. PMID:19473697

Att W, Hori N, Takeuchi M, Ouyang J, Yang Y, Anpo M, Ogawa T.Time-dependent degradation of titanium osteoconductivity: an implication of biological aging of implant materials. Biomaterials. 2009 Oct;30(29):5352-63. PMID: 19595450

Att W, Kubo K, Yamada M, Maeda H, Ogawa T. Biomechanical properties of jaw periosteum-derived mineralized culture on different titanium topography. Int J Oral Maxillofac Implants. 2009 Sep-Oct; 24(5):831-41. PMID: 19865623

Att W, Takeuchi M, Suzuki T, Kubo K, Anpo M, Ogawa T. Enhanced osteoblast function on ultraviolet light-treated zirconia. Biomaterials. 2009 Mar;30(7):1273-80. Epub 2008 Dec 18. PMID: 19095298

Att W,Yamada M, Ogawa T. Effect of titanium surface characteristics on the behavior and function of oral fibroblasts. Int J Oral Maxillofac Implants. 2009 May-Jun;24(3):419-31. PMID: 19587863

Balamotis MA, Pennella MA, Stevens JL, Wasylyk B, Belmont AS, Berk AJ. Complexity in transcription control at the activation domain-mediator interface.Sci Signal. 2009 May 5;2(69):ra20. PMID: 19417216;2/69/ra20

Bentolila LA, Doose S, EbensteinY, Iyer G, Li JJ, Michalet X, Pinaud F, Tsay J, Weiss S. Peptide-functionalized quantum dots for live diagnostic imaging and therapeutic applications. In: Inorganic Nanoprobes for Biological Sensing and Imaging, Chap. 3 (Mattoussi, H. and Cheon, J., Eds), Artech House Publisher, Boston, Massachusetts. 2009 pp. 45-69.

Bentolila LA, Ebenstein Y, Weiss S. Quantum dots for in vivo small animal imaging. J Nucl Med. 2009 Apr;50(4):493-6. PMID: 19289434.

Brush JM, Kim K, Sayre JW,McBride WH, Iwamoto KS. Imaging of radiation effects on cellular 26S proteasome function in situ. Int J Radiat Biol. 2009 Jun;85(6):483-94. PMID:19401903

Chen W, Marvizón JC. Acute inflammation induces segmental, bilateral, supraspinally mediated opioid release in the rat spinal cord, as measured by mu-opioid receptor internalization. Neuroscience. 2009 Jun 16;161(1):157-72.  PMID: 19298846.

Cho JS, Hsu JV, MorrisonSL. Localized expression of GITR-L in the tumor microenvironment promotes CD8(+) T cell dependent anti-tumor immunity. Cancer Immunol. Immunother. 2009 Jul;58(7):1057-69. PMID:19018533

Deng B, Glanzman D, Tidball JG. Nitric oxide generated by muscle corrects defects in hippocampal neurogenesis and neural differentiation caused by muscular dystrophy.  J Physiol. 2009 Apr 15;587(Pt 8):1769-78. PMID: 19237426.

Ebenstein Y, Gassman N, Kim S, Antelman J, Kim Y, Ho S, Samuel R, Michalet X, Weiss S. Lighting up individual DNA binding proteins with quantum dots. Nano Lett. 2009 Apr;9(4):1598-603. PMID: 19290670.

Evseenko D, Schenke-Layland K, Dravid G, Zhu Y, Hao QL, Scholes J, Wang XC, Maclellan WR, Crooks GM. Identification of the critical extracellular matrix proteins that promote human embryonic stem cell assembly.Stem Cells Dev. 2009 Jul-Aug;18(6):919-28. PMID:19021502

French, C.T., Panina, E.M., Yeh,S.H., Griffith, N., Arambula, D.G. and Miller, J.F. The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts. Cellular Microbiology 2009 11(12), 1735–1749. PMID: 19650828.

Fulcher JA, Chang MH, Wang S, Almazan T, Hashimi ST, Eriksson AU, Wen X, Pang M, Baum LG, Singh RR, Lee B.  Galectin-1 co-clusters CD43/CD45 on dendritic cells and induces cell activation and migration through Syk and protein kinase C signaling. J Biol Chem. 2009 Sep 25; 284 (39):26860-70. Epub 2009 Jul 27. PMID: 19635795

Gangalum RK, Bhat SP.  AlphaB-crystallin: a Golgi-associated membrane protein in the developing ocular lens. Invest Ophthalmol Vis Sci. 2009 Jul;50(7):3283-90. Epub 2009 Feb 14.  PMID: 19218604

Gold SM, Sasidhar MV, Morales LB, Du S, Sicotte NL, Tiwari-Woodruff SK, Voskuhl RR. Estrogen treatment decreases matrix metalloproteinase (MMP)-9 in autoimmune demyelinating disease through estrogen receptor alpha (ERalpha).Lab Invest. 2009 Oct;89(10):1076-83. Epub 2009 Aug 10. PMID: 19668239

Gregorian C, Nakashima J, Dry SM, Nghiemphu PL, Smith KB, Ao Y, Dang J, Lawson G, Mellinghoff IK, Mischel PS, Phelps M, Parada LF, Liu X, Sofroniew MV, Eilber FC, Wu H. PTEN dosage is essential for neurofibroma development and malignant transformation. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19479-84. Epub 2009 Oct 21. PMID: 19846776

<>Hsieh YW, Yang XJ. Dynamic Pax6 expression during the neurogenic cell cycle influences proliferation and cell fate choices of retinal progenitors. Neural Dev. 2009 Aug 17;4:32. PMID: 19686589

Kamei K, Guo S, Yu ZT, Takahashi H, Gschweng E, Suh C, Wang X, Tang J, McLaughlin J, Witte ON, Lee KB, Tseng HR. An integrated microfluidic culture device for quantitative analysis of human embryonic stem cells. Lab Chip. 2009 Feb 21;9(4):555-63. Epub 2008 Nov 20. PMID: 19190791

Klichko Y, Liong M, Choi E, Angelos S, Nel AE, Stoddart JF, Tamanoi F, Zink JI. Mesostructured silica for optical functionality, nanomachines, and drug delivery. J Am Ceram Soc. 2009 Jan 1;92(s1):s2-s10. PMID: 19834571

Krejci P, Prochazkova J, Bryja V, Jelinkova P, Pejchalova K, Kozubik A, Thompson LM, Wilcox WR. Fibroblast growth factor inhibits interferon γ-STAT1 and interleukin 6-STAT3 signaling in chondrocytes.  Cell Signal. 2009 Jan;21(1):151-60. PMID: 18950705.

Kubo K, Tsukimura N, Iwasa F, Ueno T, Saruwatari L, Aita H, Chiou WA, Ogawa T Cellular behavior on TiO2 nanonodular structures in a micro-to-nanoscale hierarchy model. Biomaterials. 2009 Oct;30(29):5319-29. Epub 2009 Jul 9. PMID:19589591

Lei Y, Segura T. DNA delivery from matrix metalloproteinase degradable poly(ethylene glycol) hydrogels to mouse cloned mesenchymal stem cells  Biomaterials. 2009 Jan;30(2):254-65. PMID: 18838159.

Lu Y, Machado HB, Douraghy A, Stout D, Herschman H, Chatziioannou AF. Experimental bioluminescence tomography with fully parallel radiative-transfer-based reconstruction framework. Opt Express. 2009 Sep 14;17(19):16681-95. PMID: 19770883

Lu Y, Douraghy A, Machado HB, Stout D, Tian J, Herschman H, Chatziioannou AF. Spectrally resolved bioluminescence tomography with the third-order simplified spherical harmonics approximation. Phys Med Biol. 2009 Nov 7;54(21):6477-93. Epub 2009 Oct 9. PMID: 19820264

Ma QL, Yang F, Rosario ER, Ubeda OJ, Beech W, Gant DJ, Chen PP, Hudspeth B, Chen C, Zhao Y, Vinters HV, Frautschy SA, Cole GM.Beta-amyloid oligomers induce phosphorylation of tau and inactivation of insulin receptor substrate via c-Jun N-terminal kinase signaling: suppression by omega-3 fatty acids and curcumin. J Neurosci. 2009 Jul 15;29(28):9078-89. PMID: 19605645

Marvizón JC, Chen W, Murphy N.  Enkephalins, dynorphins, and beta-endorphin in the rat dorsal horn: an immunofluorescence colocalization study. J Comp Neurol. 2009 Nov 1;517(1):51-68. PMID: 19711397.

Merrill AE, Merriman B, Farrington-Rock C, Camacho N, Sebald ET, Funari VA, Schibler MJ, Firestein MH, Cohn ZA, Priore MA, Thompson AK, Rimoin DL, Nelson SF, Cohn DH, Krakow D. Ciliary abnormalities due to defects in the retrograde transport protein DYNC2H1 in short-rib polydactyly syndrome.  Am J Hum Genet. 2009 Apr;84(4):542-9. PMID: 19361615.

Miyako K, Cobb LJ, Francis M, Huang A, Peng B, Pintar JE, Ariga H, Cohen P. PAPA-1 Is a nuclear binding partner of IGFBP-2 and modulates its growth-promoting actions. Mol Endocrinol. 2009 Feb;23(2):169-75. PMID: 19095771.

Montoya D, Cruz D, Teles RM, Lee DJ, Ochoa MT, Krutzik SR, Chun R, Schenk M, Zhang X, Ferguson BG, Burdick AE, Sarno EN, Rea TH, Hewison M, Adams JS, Cheng G, Modlin RL. Divergence of macrophage phagocytic and antimicrobial programs in leprosy. Cell Host Microbe. 2009 Oct 22;6(4):343-53. PMID:19837374

Nakanishi N, Hartenstein V, Jacobs DK. Development of the rhopalial nervous system in Aurelia sp.1 (Cnidaria, Scyphozoa).Dev Genes Evol. 2009 Jun;219(6):301-17. Epub 2009 Jun 20. PMID: 19543911

 Nie M, Xie Y, Loo JA,Courey AJ. Genetic and proteomic evidence for roles of Drosophila SUMO in cell cycle control, Ras signaling, and early pattern formation. PLoS One. 2009 Jun 16;4(6):e5905.PMID: 19529778.

Ochoa MT, Loncaric A, Krutzik SR, Becker TC, Modlin RL."Dermal dendritic cells" comprise two distinct populations: CD1+ dendritic cells and CD209+ macrophages. J Invest Dermatol. 2008 Sep;128(9):2225-31. Epub 2008 Mar 13. PMID:18337829 

Otoshi CK, Walwyn WM, Tillakaratne NJ, Zhong H, Roy RR, Edgerton VR. Distribution and localization of 5-HT(1A) receptors in the rat lumbar spinal cord after transection and deafferentation. J Neurotrauma. 2009 Apr;26(4):575-84. PMID: 19260781. 

Pang M, He J, Johnson P, Baum LG.. CD45-mediated fodrin cleavage during galectin-1 T cell death promotes phagocytic clearance of dying cells J Immunol. 2009 Jun 1;182(11):7001-8. PMID: 19454697.

Park H, Liu Y, Solis N, Spotkov J, Hamaker J, Blankenship JR, Yeaman MR, Mitchell AP, Liu H, Filler SG.Transcriptional responses of candida albicans to epithelial and endothelial cells. Eukaryot Cell. 2009 Oct;8(10):1498-510. Epub 2009 Aug 21. PMID:19700637 

Pinaud F, Michalet X, Iyer G, Margeat E, Moore HP, Weiss S. Dynamic partitioning of a glycosyl-phosphatidylinositol-anchored protein in glycosphingolipid-rich microdomains imaged by single-quantum dot tracking. Traffic. 2009 Jun;10(6):691-712. Epub 2009 Mar27. PMID: 19416475

Pollard JM, Gatti RA. Clinical radiation sensitivity with DNA repair disorders: an overview. Int J Radiat Oncol Biol Phys. 2009 Aug 1;74(5):1323-31. PMID: 19616740. 

Pollard JM, Reboucas JS, Durazo A, Kos I, Fike F, Panni M, Gralla EB, Valentine JS, Batinic-Haberle I, Gatti RA. Radio-protective effects of manganese-containing superoxide dismutase mimics on ataxia telangiectasia cells. Free Radic Biol Med. 2009 Aug 1;47(3):250-60. Epub 2009 Apr 21. PMID: 19389472

Qu Y, Liao L, Li Y, Zhang H, Huang Y, Duan X. Electrically conductive and optically active porous silicon nanowires. Nano Lett. 2009 Dec;9(12):4539-43. PMID: 19807130

 Reliene R, Pollard JM, Sobol Z, Trouiller B, Gatti RA, Schiestl RHN-acetyl cysteine protects against ionizing radiation-induced DNA damage but not against cell killing in yeast and mammals. Mutat Res. 2009 Jun 1;665(1-2):37-43. PMID: 19427509.  

Rodríguez JA, Lopez MA, Thayer MC, Zhao Y, Oberholzer M, Chang DD, Kisalu NK, Penichet ML, Helguera G, Bruinsma R, Hill KL, Miao J. Propulsion of African trypanosomes is driven by bihelical waves with alternating chirality separated by kinks. Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19322-7. PMID: 19880745

Sakagami K, Gan L, Yang XJ. Distinct effects of Hedgehog signaling on neuronal fate specification and cell cycle progression in the embryonic mouse retina. J Neurosci. 2009 May 27;29(21):6932-44. PMID: 19474320

Sato N, Ueno T, Kubo K, Suzuki T, Tsukimura N, Att W, Yamada M, Hori N, Maeda H, Ogawa T.N-Acetyl cysteine (NAC) inhibits proliferation, collagen gene transcription, and redox stress in rat palatal mucosal cells. Dent Mater. 2009 Dec;25(12):1532-40. Epub 2009 Aug 12. PMID: 19679343 

Schenke-Layland K, Rofail F, Heydarkhan S, Gluck JM, Ingle NP, Angelis E, Choi CH, MacLellan WR, Beygui RE, Shemin RJ, Heydarkhan-Hagvall S. The use of three-dimensional nanostructures to instruct cells to produce extracellular matrix for regenerative medicine strategies. Biomaterials. 2009 Sep;30(27):4665-75. Epub 2009 Jun 12. PMID:19524289 

Sozmen EG, Kolekar A, Havton LA, Carmichael ST. A white matter stroke model in the mouse: axonal damage, progenitor responses and MRI correlates. J Neurosci Methods. 2009 Jun 15;180(2):261-72. Epub 2009 Mar 31. PMID:19439360 

Spence RD, Zhen Y, White S, Schlinger BA, Day LB Recovery of motor and cognitive function after cerebellar lesions in a songbird: role of estrogens. Eur J Neurosci. 2009 Mar;29(6):1225-34. PMID:19302157

Suzuki T, Hori N, Att W, Kubo K, Iwasa F, Ueno T, Maeda H, Ogawa T.Ultraviolet treatment overcomes time-related degrading bioactivity of titanium. Tissue Eng Part A. 2009 Dec;15(12):3679-88. PMID: 19397472

Tan M, Walwyn WM, Evans CJ, Xie CW. p38 MAPK and beta-arrestin 2 mediate functional interactions between endogenous micro-opioid and alpha2A-adrenergic receptors in neurons. J Biol Chem. 2009 Mar 6;284(10):6270-81. PMID: 19126537.

Thakor DK, Lin A, Matsuka Y, Meyer EM, Ruangsri S, Nishimura I, Spigelman I.Increased peripheral nerve excitability and local NaV1.8 mRNA up-regulation in painful neuropathy. Mol Pain. 2009 Mar 25;5:14. PMID:19320998

Voskuhl RR, Peterson RS, Song B, Ao Y, Morales LB, Tiwari-Woodruff S, Sofroniew MV. Reactive astrocytes form scar-like perivascular barriers to leukocytes during adaptive immune inflammation of the CNS. J Neurosci. 2009 Sep 16;29(37):11511-22. PMID: 19759299

Xia T, Kovochich M, Liong M, Meng H, Kabehie S, George S, Zink JI, Nel AE.Polyethyleneimine coating enhances the cellular uptake of mesoporous silica nanoparticles and allows safe delivery of siRNA and DNA constructs. ACS Nano. 2009 Oct 27;3(10):3273-86. PMID:19739605 

Youn JY, Wang T, Cai HCirc Res. 2009 Jan 2;104(1):50-9. Epub 2008 Nov 26. PMID: 19038867


Angelis E, Garcia A, Chan SS, Schenke-Layland K, Ren S, Goodfellow SJ, Jordan MC, Roos KP, White RJ, MacLellan WR. A cyclin D2-Rb pathway regulates cardiac myocyte size and RNA polymerase III after biomechanical stress in adult myocardium. Circ Res. 2008  May 23; 102(10):1222-9.  Epub 2008 Apr 17. PMID:18420946

 Ascenzi MG, Gill J, Lomovtsev A. Orientation of collagen at the osteocyte lacunae in human secondary osteons. J Biomech. 2008 Dec 5;41(16):3426-35. PMID: 19013574

Beigneux AP, Gin P, Davies BS, Weinstein MM, Bensadoun A, Ryan RO, Fong LG, Young G. Glycosylation of Asn-76 in mouse GPIHBP1 is critical for its appearance on the cell surface and the binding of chylomicrons and lipoprotein lipase. J Lipid Res. 2008 Jun;49(6):1312-21.  PMID: 18340083.

Bentolila, L. A., Michalet, X., and Weiss, S. Quantum optics: colloidal fluorescent semiconductor nanocrystals (quantum dots) in single-molecule detection and imaging. In: Single-Molecules and Biotechnology, Chap. 3 (Rigler, R. and Vogel, E., Eds), Springer-Verlag, Berlin Heidelberg.2008, pp. 53-81. (no PMID) DOI:  10.1007/978-3-540-73924-1

Bernard P, Fleming A, Lacombe A, Harley VR, Vilain E. Wnt4 inhibits beta-catenin/TCF signalling by redirecting beta-catenin to the cell membrane. Biol Cell. 2008 Mar;100(3):167-77. PMID: 17976036

Carmichael ST, Vespa PM, Saver JL, Coppola G, Geschwind DH, Starkman S,Miller CM, Kidwell CS, Liebeskind DS, Martin NA.  Genomic profiles of damage and protection in human intracerebral hemorrhage. J. Cereb Blood Flow Metab. 2008 28:1860-75. PMID: 18628781.

Chang YP, Pinaud F, Antelman J, Weiss S. Tracking bio-molecules in live cells using quantum dots.J Biophotonics. 2008 Sep;1(4):287-98 PMID: 19343652.

Chen W, Song B, Marvizón JC. Inhibition of opioid release in the rat spinal cord by alpha2C adrenergic receptors. Neuropharmacology. 2008 May;54(6):944-53. PMID:18343461.

Chen W, Song B, Zhang G, Marvizón JC. Effects of veratridine and high potassium on micro-opioid receptor internalization in the rat spinal cord: stimulation of opioid release versus inhibition of internalization. J Neurosci Methods. 2008 May 30;170(2):285-93. PMID:18377995. 

Coffinier C, Hudon SE, Lee R, Farber EA, Nobumori C, Miner JH, Andres DA, Spielmann HP, Hrycyna CA, Fong LG, Young SG. (2008) A potent HIV protease inhibitor, darunavir, does not inhibit ZMPSTE24 or lead to an accumulation of farnesyl-prelamin A in cells. J Biol. Chem. 283:9797-9804. PMID: 18230615. 

Cruz D, Watson AD, Miller CS, Montoya D, Ochoa MT, Sieling PS, Gutierrez MA, Navab M, Reddy ST, Witztum JL, Fogelman AM, Rea TH,Eisenberg D, Berliner J,  Modlin RL. Host-derived oxidized phospholipids and HDL regulate innate immunity in human leprosy. J Clin Invest. 2008 .118(8):2917. PMID: 18636118. 

Duong HA, Nagaraj R, Wang CW, Ratnaparkhi G, Sun YH, Courey AJ. Non-cell-autonomous inhibition of photoreceptor development by Dip3. Dev Biol. 2008 Nov 1;323(1):105-13. PMID: 18761008.

Duong HA, Wang CW, Sun YH, Courey AJ. Transformation of eye to antenna by misexpression of a single gene. Mech Dev. 2008 Jan-Feb;125(1-2):130-41. PMID: 18037276. 

Eriksson AU, and R. R. Singh. Cutting Edge: Migration of Langerhans dendritic cells is impaired in autoimmune dermatitis. J Immunol 2008 Dec 1; 181:7468-7472. PMID: 19017935.

Fein JA, Sokolow S, Miller CA, Vinters HV, Yang F, Cole GM , Gylys KH Co-localization of amyloid beta and tau pathology in Alzheimer’s disease synaptosomes. Am J Pathol. 2008;172(6):1683-92. PMID: 18467692

Hamada T, Fondevila C, Busuttil RW, Coito AJ. Metalloproteinase-9 deficiency protects against hepatic ischemia/reperfusion injury. Hepatology. 2008 Jan;47(1):186-98. PMID: 17880014 

Hamada T, Tsuchihashi S, Avanesyan A, Duarte S, Moore C, Busuttil RW, Coito AJ. Cyclooxygenase-2 deficiency enhances Th2 immune responses and impairs neutrophil recruitment in hepatic ischemia/reperfusion injury. J Immunol. 2008 Feb 1;180(3):1843-53. PMID: 18209082 

Hamadani KM, Weiss S. Nonequilibrium single molecule protein folding in a coaxial mixer. Biophys J. 2008 Jul;95(1):352-65. PMID: 18339751

Hanson JA, Chang CB, Graves SM, Li Z, Mason TG, Deming TJ. Nanoscale double emulsions stabilized by single-component block copolypeptides. Nature. 2008 Sep 4;455(7209):85-8. PMID: 18769436 

Herrmann JE, Imura T, Song B, Qi J, Ao Y, Nguyen TK, Korsak RA, Takeda K, Akira S, Sofroniew MV. STAT3 is a critical regulator of astrogliosis and scar formation after spinal cord injury. J Neurosci. 2008 Jul 9;28(28):7231-43. PMID: 18614693 

Hoftman AD, Tai LQ, Tze S, Seligson D, Gatti RA, McCurdy DK. MAGE-B2 autoantibody: a new biomarker for pediatric systemic lupus erythematosus. J Rheumatol. 2008 Dec;35(12):2430-8. PMID: 19004030. 

Iyer G, Michalet X, Chang YP, Pinaud FF, Matyas SE, Payne G, Weiss S. High affinity scFv-hapten pair as a tool for quantum dot labeling and tracking of single proteins in live cells.. Nano Lett. 2008 Dec;8(12):4618-23. PMID: 19053789.

Kim K, Brush JM, Watson PA, Cacalano NA, Iwamoto KS, McBride WH.Epidermal growth factor receptor vIII expression in U87 glioblastoma cells alters their proteasome composition, function, and response to irradiation.  Mol Cancer Res. 2008 Mar;6(3):426-34. PMID: 18337449 

Krejci P, Salazar L, Goodridge HS, Kashiwada TA, Schibler MJ, Jelinkova P, Thompson LM, Wilcox WR. STAT1 and STAT3 do not participate in FGF-mediated growth arrest in chondrocytes. J Cell Sci. 2008 Feb 1;121(Pt 3):272-81. PMID: 18198189.

Lao L, Song B, Chen W, Marvizón JC. Noxious mechanical stimulation evokes the segmental release of opioid peptides that induce mu-opioid receptor internalization in the presence of peptidase inhibitors.  Brain Res. 2008 Mar 4;1197:85-93.  PMID: 18207137. 

Lee BY, Clemens DL, Horwitz MA. The metabolic activity of Mycobacterium tuberculosis, assessed by use of a novel inducible GFP expression system, correlates with its capacity to inhibit phagosomal maturation and acidification in human macrophages. Mol Microbiol. 2008 May;68(4):1047-60. PMID: 18363792. 

Liong M, Lu J, Kovochich M, Xia T, Ruehm SG, Nel AE, Tamanoi F, Zink JI. Multifunctional inorganic nanoparticles for imaging, targeting, and drug delivery. ACS Nano. 2008 May;2(5):889-96 2008 PMID: 19206485. 

Lu J, Choi E, Tamanoi F, Zink JI. Light-activated nanoimpeller-controlled drug release in cancer cells. Small. 2008 Apr;4(4):421-6. PMID: 18383576. 

Ma QL, Yang F, Calon F, Ubeda OJ, Hansen JE, Weisbart RH, Beech W, Frautschy SA, Cole GM. p21-activated kinase-aberrant activation and translocation in Alzheimer disease pathogenesis. J Biol Chem. 2008 May 16;283(20):14132-43. PMID: 18347024

Malmstadt N, Jeon TJ, Schmidt JJ.  Long-lived planar lipid bilayer membranes anchored to an in situ polymerized hydrogel. Adv. Mater.  2008. 20 (1), 84-89 DOI: 10.1002/adma.200700810  (no PMID). 

Ochoa MT, Loncaric A, Krutzik SR, Becker TC, Modlin RL.  “Dermal dendritic cells” comprise two distinct populations: CD1+ dendritic cells and CD209+ macrophages.  J Invest Dermatol. 2008. 128(9):2225-31 PMID: 18337829.

Ratnaparkhi GS, Duong HA, Courey AJ. Dorsal interacting protein 3 potentiates activation by Drosophila Rel homology domain proteins. Dev Comp Immunol. 2008;32(11):1290-300. PMID: 18538389 

Schenke-Leyland K.  Non-invasive multiphoton imaging of extracellular matrix structures.  J. Biophoton. 1, No. 6, 451–462 (2008) PMID: 19343671. 

Schenke-Layland K, Rhodes KE, Angelis E, Butylkova Y, Heydarkhan-Hagvall S, Gekas C, Zhang R, Goldhaber JI, Mikkola HK, Plath K, MacLellan WR. Reprogrammed mouse fibroblasts differentiate into cells of the cardiovascular and hematopoietic lineages. Stem Cells. 2008 Jun;26(6):1537-46. Epub 2008 May 1. PMID: 18450826

Schenke-Layland K, Xie J, Angelis E, Starcher B, Wu K, Riemann I, MacLellan WR, Hamm-Alvarez SF. Increased degradation of extracellular matrix structures of lacrimal glands implicated in the pathogenesis of Sjögren's syndrome. Matrix Biol. 2008 Jan;27(1):53-66. Epub 2007 Jul 17. PMID:17689946 

Smith-Bouvier DL, Divekar AA, Sasidhar M, Du S, Tiwari-Woodruff SK, King JK, Arnold AP, Singh RR, Voskuhl RR. A role for sex chromosome complement in the female bias in autoimmune disease. J Exp Med. 2008 May 12;205(5):1099-108. PMID: 18443225.

Tang ED,Wang CY. MAVS self-association mediates antiviral innate immune signaling.J Virol. 2009 Apr;83(8):3420-8.PMID: 19193783. 

Xia T, Kovochich M, Liong M, Mädler L, Gilbert B, Shi H, Yeh JI, Zink JI, Nel AE.Comparison of the mechanism of toxicity of zinc oxide and cerium oxide nanoparticles based on dissolution and oxidative stress properties. ACS Nano. 2008 Oct 28;2(10):2121-34. PMID:19206459 

Xia T,Kovochich M,Liong M,Zink JI. Cationic polystyrene nanosphere toxicity depends on cell-specific endocytic and mitochondrial injury pathways. ACS Nano. 2008 Jan;2(1):85-96.PMID: 19206551.


Ambrose M, Goldstine JV, Gatti RA. Intrinsic mitochondrial dysfunction in ATM-deficient lymphoblastoid cells. Hum Mol Genet. 2007 Sep 15;16(18):2154-64. PMID: 17606465.

Barat B, Wu AM.  Metabolic biotinylation of recombinant antibody by biotin ligase retained in the endoplasmic reticulum. Biomol Eng. 2007 Sep;24(3):283-91. Epub 2007 Feb 15. PMID: 17379573

Beigneux AP, Davies BS, Gin P, Weinstein MM, Farber E, Qiao X, Peale F, Bunting S, Walzem RL, Wong JS, Blaner WS, Ding ZM, Melford K, Wongsiriroj N, Shu X, de Sauvage F, Ryan RO, Fong LG, Bensadoun A, Young SG .Glycosylphosphatidylinositol-anchored high density lipoproteinbinding protein 1 plays a critical role in the lipolytic processing of chylomicrons. Cell Metab. 2007 Apr;5(4):279-91. PMID: 17403372

Chen W, Song B, Lao L, Pérez OA, Kim W, Marvizón JC. Comparing analgesia and mu-opioid receptor internalization produced by intrathecal enkephalin: requirement for peptidase inhibition.  Neuropharmacology. 2007 Oct;53(5):664-76.  PMID: 17845806.

Fiala M, Liu PT, Espinosa-Jeffrey A, Rosenthal MJ, Bernard G, Ringman JM, Sayre J, Zhang L, Zaghi J, Dejbakhsh S, Chiang B, Hui J, Mahanian M, Baghaee A, Hong P, Cashman J. Innate immunity and transcription of MGAT-III and Toll-like receptors in Alzheimer's disease patients are improved by bisdemethoxycurcumin. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12849-54. PMID: 17652175

Gin P, Beigneux AP, Davies B, Young MF, Ryan RO, Bensadoun A, Fong LG, Young SG.Normal binding of lipoprotein lipase, chylomicrons, and apo-AV to GPIHBP1 containing a G56R amino acid substitution. Biochim Biophys Acta. 2007 Dec;1771(12):1464-8. PMID: 17997385

Gylys KH, Fein JA, Yang F Miller CA, Cole GM   Increased cholesterol in Ab-positive nerve terminals from Alzheimer’s disease cortex.  Neurobiol Aging. 2007 Jan;28(1):8-17. PMID: 16332401

Hernandez CJ, Mason TG.  Colloidal alphabet soup: monodisperse dispersions of shape-designed lithoparticles. J. Phys. Chem. C. 2007 111 (12), 4477-4480. DOI: 10.1021/jp0672095  (no PMID)

Holowka EP, Sun VZ, Kamei DT, Deming TJ. Polyarginine segments in block copolypeptides drive both vesicular assembly and intracellular delivery. Nat Mater. 2007 Jan;6(1):52-7. PMID: 17143266.

Iyer G, Pinaud F, Tsay J, Weiss S.Solubilization of quantum dots with a recombinant peptide from Escherichia coli. Small. 2007 May;3(5):793-8.  PMID: 17393550

Kawaguchi R, Yu J, Honda J, Hu J, Whitelegge J, Ping P, Wiita P, Bok D, Sun H.  A membrane receptor for retinol binding protein mediates cellular uptake of vitamin A.Science. 2007 Feb 9;315(5813):820-5. PMID: 17255476

Lee DJ, Sieling PA, Ochoa MT, Krutzik SR, Guo B, Hernandez M, Rea TH, Cheng G, Colonna M, Modlin RL. LILRA2 activation inhibits dendritic cell differentiation and antigen presentation to T cells. J Immunol. 179(12):8128-36 PMID: 18056355.

Lee KW, Cobb L, Ma L, Liu B, Milbrandt J, Cohen P.  Contribution of the Orphan Nuclear Receptor Nur77 to the Apoptotic Action of IGFBP-3. Carcinogenesis. 2007; 28:1653-8. PMID: 17434920.

Liu B, Lee KW, Anzo M, Zhang B, Zi X, Tao Y, Shiri L, Pollak M, Lin S, Cohen P. IGFBP-3 inhibition of prostate cancer growth involves suppression of angiogenesis. Oncogene.  2007; 26:1811-9. PMID: 16983336

Lu J., Liong M, Zink JI, Tamanoi F. Mesoporous silica nanoparticles as a delivery system for hydrophobic anticancer drugs. Small. 2007 Aug;3(8):1341-6. PMID: 17566138.

 Lu J, Liong M, Sherman S, Xia T, Kovochich M, Nel AE, Zink JI, Tamanoi F. Mesoporous silica nanoparticles for cancer therapy: energy-dependent cellular uptake and delivery of  paclitaxel to cancer cells. NanoBioTechnology, 2007 3(2) 89-95.May, 2007.  (no PMID) DOI 10.1007/s12030-008-9003-3

Marvizón JC, Pérez OA, Song B, Chen W, Bunnett NW, Grady EF, Todd AJ. Calcitonin receptor-like receptor and receptor activity modifying protein 1 in the rat dorsal horn: localization in glutamatergic presynaptic terminals containing opioids and adrenergic alpha2C receptors. Neuroscience. 2007 Aug 10;148(1):250-65. PMID: 17614212.

Niazi KR, Ochoa MT, Sieling PA, Rooke NE, Peter AK, Mollahan P, DickeyM, Rabizadeh S, Rea TH, Modlin RL.  Activation of human CD4+ T cells bytargeting MHC class II epitopes to endosomal compartments using human CD1 tail sequences. Immunology.  2007.122(4):522-31 PMID: 17635609.

Schenke-Layland K, Angelis E, Rhodes KE, Heydarkhan-Hagvall S, Mikkola HK, Maclellan WR. Collagen IV induces trophoectoderm differentiation of mouse embryonic stem cells. Stem Cells. 2007 Jun;25(6):1529-38. Epub 2007 Mar 15. PMID:17363553

Sieling PA, Legaspi A, Ochoa MT, Rea TH, Modlin RL. Regulation of human T-cell homing receptor expression in cutaneous bacterial infection. Immunology. 2007 Apr;120(4):518-25. PMID:17343614

Tiwari-Woodruff S, Morales LB, Lee R, Voskuhl RR . Differential neuroprotective and antiinflammatory effects of estrogen receptor (ER)alpha and ERbeta ligand treatment. Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14813-8. PMID: 17785421

Walwyn W, Evans CJ, Hales TG. Beta-arrestin2 and c-Src regulate the constitutive activity and recycling of mu opioid receptors in dorsal root ganglion neurons. J Neurosci. 2007 May 9;27(19):5092-104. PMID: 17494695.



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Bentolila LA,Weiss S. Single-step multicolor fluorescence in situ hybridization analysis using semiconductor Quantum Dot-DNA conjugates. S. Cell Biochem. Biophys 2006 45(1):59-70. DOI10.1385/CBB:45:1:59 (no PMID)


Blair A, Tomlinson A, Pham H, Gunsalus KC, Goldberg ML, Laski FA. Twinstar, the Drosophila homolog of cofilin/ADF, is required for planar cell polarity patterning Development. 2006. 133(9):1789-97. PMID: 16571634


Fong LG, Ng JK, Lammerding J, Vickers TA, Meta M, Cote N, Gavino B, Qiao X, Chang SY, Young SR, Yang SH, Stewart CL, Lee RT, Bennett CF, Bergo MO, Young SG. Prelamin A and lamin A appear to be dispensable in the nuclear lamina. J Clin Invest. 2006 116(3):743-752. PMID: 16511604


He J, Baum LG.Endothelial cell expression of galectin-1 induced by prostate cancer cells inhibits T cell transendothelial migration. Lab Invest. 2006 Jun;86(6):578-90. PMID: 16607379


Hernandez JD, Nguyen JT, He J, Wang W, Ardman B, Green JM, Fukuda M, Baum LG. Galectin-1 binds different CD43 glycoforms to cluster CD43 and regulate T cell death. J Immunol. 2006 Oct 15;177(8):5328-36. PMID: 17015718


Morales LB, Loo KK, Liu HB, Peterson C, Tiwari-Woodruff S, Voskuhl RR. Treatment with an estrogen receptor alpha ligand is neuroprotective in experimental autoimmune encephalomyelitis. J Neurosci. 2006 Jun 21;26(25):6823-33. PMID: 16793889


Ramirez-Carrozzi VR, Nazarian AA, Li CC, Gore SL, Sridharan R, Imbalzano AN, Smale ST. Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response. Genes Dev. 2006 Feb 1;20(3):282-96. PMID: 16452502.


Ratnaparkhi GS, Jia S, Courey AJ. Uncoupling dorsal-mediated activation from dorsal-mediated repression in the Drosophila embryo. Development. 2006 Nov;133(22):4409-14.PMID: 17035291.


Renn CN, Sanchez DJ, Ochoa MT, Legaspi AJ, Oh CK,. Liu PT , Krutzik SR. Sieling PA, Cheng G. Modlin RL. TLR Activation of Langerhans cell-like dendritic cells triggers an antiviral immune response. J Immunol. 2006. 177(1):298-305. PMID: 16785525


Stillman BN, Hsu DK, Pang M, Brewer CF, Johnson P, Liu FT, Baum LG.Galectin-3 and galectin-1 bind distinct cell surface glycoprotein receptors to induce T cell death. J Immunol. 2006 Jan 15;176(2):778-89. PMID: 1639396


Tan BH,  Meinken C, Bastian M, Bruns H,Legaspi A, Ochoa MT, Krutzik SR, Bloom BR, Ganz T, Modlin RL, Stenger S.    Macrophages acquire neutrophil granules for antimicrobial activity against intracellular pathogens.  J Immunol. 2006. 177:1864-71 PMID: 16849498


Tiwari-Woodruff S, Beltran-Parrazal L, Charles A, Keck T, Vu T, Bronstein J. K+ channel KV3.1 associates with OSP/claudin-11 and regulates oligodendrocyte development. Am J Physiol Cell Physiol. 2006 Oct;291(4):C687-98. PMID: 16624990


Tsay JM, Doose S, Weiss S. Rotational and translational diffusion of peptide-coated CdSe/CdS/ZnS nanorods studied by fluorescence correlation spectroscopy. J Am Chem Soc. 2006 Feb 8;128(5):1639-47. PMID: 16448137

Zhao L, Ma QL, Calon F, Harris-White ME, Yang F, Lim GP, Morihara T, Ubeda OJ, Ambegaokar S, Hansen JE, Weisbart RH, Teter B, Frautschy SA, Cole GM. Role of p21-activated kinase pathway defects in the cognitive deficits of Alzheimer disease.Nat Neurosci. 2006 Feb;9(2):234-42. PMID: 16415866.



Banks DJ, Barnajian M, Maldonado-Arocho FJ, Sanchez AM, Bradley KA. Anthrax toxin receptor 2 mediates Bacillus anthracis killing of macrophages following spore challenge.  Cell Microbiol. 2005 Aug;7(8):1173-85. PMID: 16008584


Holowka EP, Pochan DJ, Deming TJ. Charged polypeptide vesicles with controllable diameter.  J Am Chem Soc. 2005 Sep 7;127(35):. PMID: 16131225


Kickhoefer VA, Garcia Y, Mikyas Y, Johansson E, Zhou JC, Raval-Fernandes S, Minoofar P, Zink JI, Dunn B, Stewart PL, Rome LH. Engineering of vault nanocapsules with enzymatic and fluorescent properties. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4348-52. PMID: 15753293


Krutzik S R., Tan B, Li H, Ochoa MT, Liu PT, Sharfstein SE, Graeber TG, Sieling PA, Liu Y, Rea TH, Bloom BR, Modlin RL.  Activation of Toll Like receptors triggers the rapid differentiation of monocytes into macrophages and dendritic cells. Nat. Med.  2005.  11(6):653-60. PMID: 15880118


Lee KW, Ma L, Yan X, Liu B, Zhang XK, Cohen P.  Rapid apoptosis induction by IGFBP-3 involves an IGF -independent nucleo-mitochondrial translocation of RXRalpha/Nur77.  J Biol Chem.  2005; 280:16942-8. PMID: 15731112


Liu B, Lee KW, Li H, Ma L, Lin GL, Chandraratna RA, Cohen P.  Combination therapy of insulin-like growth factor binding protein-3 and retinoid X receptor ligands synergize on prostate cancer cell apoptosis in vitro and in vivo. Clin Cancer Res. 2005;11:4851-6. PMID: 16000583


Michalet X, Pinaud FF, Bentolila LA, Tsay JM, Doose S, Li JJ, Iyer GS, Weiss S. Peptide-coated semiconductor nanocrystals for biomedical applications. Proceedings of SPIE, 2005, 5704, 1-12. DOI:10.1117/12.589498 (no PMID)


Michalet X, Pinaud FF, Bentolila LA, Tsay JM, Doose S, Li J, Sundaresan G,Wu AM, Gambhir SS, Weiss S. Quantum dots for live cells, in vivo imaging and diagnostics. Science, 2005, 307, 538-544. PMID: 15681376


Morizono K, Xie Y, Ringpis GE, Johnson M, Nassanian H, Lee B, Wu L, Chen IS. Lentiviral vector retargeting to P-glycoprotein on metastatic melanoma through intravenous injection.  Nat Med. 2005 Mar;11(3):346-52. PMID: 15711560


Nally JE, Chow E, Fishbein MC, Blanco DR, Lovett MA. Changes in lipopolysaccharide O antigen distinguish acute versus chronic Leptospira interrogans infections. Infect Immun. 2005 Jun;73(6):3251-60. PMID: 15908349


Pinaud F, Michalet X, Bentolila LA, Tsay JM, Doose S, Li JJ, Iyer G. and Weiss S. Advances in fluorescence imaging with quantum dots bio-probes. Biomaterials, 2005 27(9):1679-1687 PMID: 16318871


Round JL, Tomassian T, Zhang M, Patel V, Schoenberger SP, Miceli MC. Dlgh1 coordinates actin polymerization, synaptic T cell receptor and lipid raft aggregation, and effector function in T cells. J Exp Med. 2005 Feb 7;201(3):419-30. PMID: 15699074


Song H, Nie M, Qiao F, Bowie JU, Courey AJ.) Antagonistic regulation of Yan nuclear export by Mae and Crm1 may increase the stringency of the Ras response. Genes Dev. 2005 Aug 1;19(15):1767-72.PMID: 16027171

Tsay JM, Doose S, Pinaud F, Weiss S. Enhancing the photoluminescence of peptide-coated nanocrystals with shell composition and UV irradiation. J Phys Chem B. 2005 Feb 10;109(5):1669-74. PMID: 16429593


Wang L, Radu CG, Yang LV, Bentolila LA, Riedinger M, Witte ON. Lysophosphatidylcholine-induced surface redistribution regulates signaling of the murine G-protein-coupled receptor G2A. Mol Biol Cell. 2005 May;16(5):2234-47.PMID: 15728718


Yang F, Lim GP, Begum AN, Ubeda OJ, Simmons MR, Ambegaokar SS, Chen PP, Kayed R, Glabe CG, Frautschy SA, Cole GM. Curcumin inhibits formation of amyloid beta oligomers and fibrils, binds plaques, and reduces amyloid in vivo. J Biol Chem. 2005 Feb 18;280(7):5892-901. PMID: 15590663.


Calon F, Lim GP, Yang F, Morihara T, Teter B, Ubeda O, Rostaing P, Triller A, Salem N Jr, Ashe KH, Frautschy SA, Cole GM.Docosahexaenoic acid protects from dendritic pathology in an Alzheimer's disease mouse model. Neuron. 2004 Sep 2;43(5):633-45. PMID: 15339646.

Faulkner JR, Herrmann JE, Woo MJ, Tansey KE, Doan NB, Sofroniew MV. Reactive astrocytes protect tissue and preserve function after spinal cord injury.  J Neurosci. 2004 Mar 3;24(9):2143-55 PMID: 14999065

Gangalum RK, Schibler MJ, Bhat SP. Small heat shock protein alphaB-crystallin is part of cell cycle-dependent Golgi reorganization. J Biol Chem. 2004 Oct 15;279(42):43374-7. PMID: 15339919.

Garcia AD, Doan NB, Imura T, Bush TG, Sofroniew MV. GFAP-expressing progenitors are the principal source of constitutive neurogenesis in adult mouse forebrainNat Neurosci. 2004 Nov;7(11):1233-41. PMID: 15494728

Hahn HP, Pang M, He J, Hernandez JD, Yang RY, Li LY, Wang X, Liu FT, Baum LG. Nuclear translocation of Endonuclease G in caspase- and cytochrome c-independent galectin-1 induced T cell death. Cell Death Differ. 2004 Dec;11(12):1277-86. PMID: 15297883

He J, Baum LG. Presentation of galectin-1 by extracellular matrix triggers T cell death. J Biol Chem. 2004 Feb 6;279(6):4705-12. PMID: 14617626

Herrmann JE, Imura T, Song B, Qi J, Ao Y, Nguyen TK, Korsak RA, Takeda K, Akira S, Sofroniew MV.STAT3 is a critical regulator of astrogliosis and scar formation after spinal cord injury. J Neurosci. 2008 Jul 9;28(28):7231-43. PMID: 18614693

Hunger RE, Sieling PA, Ochoa MT, Sugaya M, Burdick AE, Rea TH, Brennan PJ, Belisle JT, Blauvelt A, Porcelli SA, Modlin RL.  Langerhans cells utilize CD1a and langerin to efficiently present nonpeptide antigens to T cells.  J Clin Invest. 2004.  13(5):701-8. PMID: 14991068

Lee KW, Liu B, Ma L, Li H, Bang P, Koeffler HP, Cohen P. Cellular internalization of insulin-like growth factor binding protein-3 (IGFBP-3): Distinct endocytic pathways facilitate reuptake and nuclear localization.  J Biol Chem. 2004; 279:469-76. PMID: 14576164


Pinaud F, King D, Moore HP, Weiss S. Bioactivation and cell targeting of semiconductor CdSe/ZnS nanocrystals with phytochelatin-related peptides. J. Am. Chem. Soc., 2004, 126, 6115-6123. PMID: 15137777


Qiao F, Song H, Kim CA, Sawaya MR, Hunter JB, Gingery M, Rebay I, Courey AJ, Bowie JU.Derepression by depolymerization; structural insights into the regulation of Yan by Mae. Cell.2004 Jul 23;118(2):163-73. PMID: 15260987


Shim ML, Levitt Katz LE, Davis J, Dotzler WC, Cohen P, Ferry RJ Jr. Insulin-like growth factor binding protein-3 is a novel mediator of apoptosis in insulin-secreting cells.  Growth Horm IGF Res. 2004; 14:216-25. PMID: 15125883


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Song H, Hasson P, Paroush Z, Courey AJ.Groucho oligomerization is required for repression in vivo. Mol Cell Biol. 2004 May;24(10):4341-50. PMID: 15121853


Amano M, Galvan M, He J, Baum LG.The ST6Gal I sialyltransferase selectively modifies CD45 and negatively regulatesgalectin-1 induced CD45 clustering, phosphatase modulation and T cell death. J Biol Chem. 2003 Feb 28;278(9):7469-75.PMID: 12499376.

Franklin SL, Ferry RJ Jr, Cohen P. Rapid insulin-like growth factor (IGF)-independent effects of IGF binding brotein-3 on endothelial cell survival. J Clin Endocrinol Metab 2003; 88:900-7. PMID: 12574231

Ikonen M, Liu B, Hashimoto Y, Ma L, Lee KW, Niikura T, Nishimoto I, Cohen P.  Interaction between the Alzheimer's survival peptide humanin and insulin-like growth factor-binding protein 3 regulates cell survival and apoptosis.  Proc Natl Acad Sci U S A. 2003; 100:13042­-13047. PMID: 14561895

Krutzik SR, Ochoa MT, Sieling PA, Uematsu S, Ng YW, Legaspi A, Liu PT, Cole ST, Godowski PJ, Maeda Y, Sarno EN, Norgard MV, Brennan PJ, Akira S, Rea TH, Modlin RL.  Activation and regulation of Toll-like receptors 2 and 1 in human leprosy. Nat. Med. 2003. 9(5):525-32. PMID: 12692544

Lao LJ, Song B, Marviz¨®n JC. Neurokinin release produced by capsaicin acting on the central terminals and axons of primary afferents: relationship with N-methyl-D-aspartate and GABA(B) receptors. Neuroscience. 2003;121(3):667-80. PMID: 14568027

Oliveiros R, Ochoa MT, Sieling PA, Rea TH, Anura Rambukkana, Euzenir N Sarno, Modlin, RL.  Expression of Toll-like receptor 2 on Human Schwan cells: a mechanism of nerve damage in leprosy.  Infection and Immunity. 2003. 71(3):1427-33 PMID: 12595460

Papathanasiou P, Perkins AC, Cobb BS, Ferrini R, Sridharan R, Hoyne GF, Nelms KA, Smale ST, Goodnow CC. Widespread failure of hematolymphoid differentiation caused by a recessive niche-filling allele of the Ikaros transcription factor. Immunity.2003 Jul;19(1):131-44. PMID: 12871645        ob=ArticleURL&_udi=B6WSP-493H8MP-G&_user=4423&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000059605&_version=1&_urlVersion=0&_userid=4423&md5=835be550cd058cbdf063496a96d4462e

Song B, Marviz¨®n JC. Peptidases prevent mu-opioid receptor internalization in dorsal horn neurons by endogenously released opioids. J Neurosci. 2003 Mar 1;23(5):1847-58. PMID: 12629189  

Song B, Marviz¨®n JC. Dorsal horn neurons firing at high frequency, but not primary afferents, release opioid peptides that produce micro-opioid receptor internalization in the rat spinal cord. J Neurosci. 2003 Oct 8;23(27):9171-84. PMID: 14534251

Tsay, J., Pflughoefft, M., Bentolila, L. A. and Weiss, S. Hybrid approach to the synthesis of highly luminescent CdTe/ZnS and CdHgTe/ZnS nanocrystals. J. Am. Chem. Soc., 2003, 126, 1926-1927. PMID: 14971912


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Kim J, Ochoa MT, Krutzik S, Takeuchi O,  Brightbill, Holland D, Cunliffe WJ, Akira J, Godowski PJ, Modlin RL. Activation of inflamatory cytokine responses in acne occurs through Toll-like receptor 2.  J Immunol.. 2002. 169(3):1535-41 PMID: 12133981

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